Variant report

Variant	rs739070
Chromosome Location	chr22:33548109-33548110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1894487	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2105877	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2213456	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227080	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301412	0.92[YRI][hapmap]
rs2301413	0.86[YRI][hapmap]
rs4432559	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4455259	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs5754442	0.92[YRI][hapmap]
rs5754463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754475	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs5754476	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs5754478	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs5754481	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs5998745	0.84[YRI][hapmap]
rs5998746	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs5998750	0.86[JPT][hapmap]
rs5998756	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998757	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987640	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv914982	chr22:33512743-33558767	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1056019	chr22:33527873-33657289	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv933455	chr22:33532697-33915429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33547400-33548200	Weak transcription	Pancreas	Pancrea
2	chr22:33547600-33548400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr22:33547600-33548400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr22:33547600-33548400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr22:33547800-33548400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr22:33548000-33548400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr22:33548000-33548400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr22:33548000-33548400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr22:33548000-33548400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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