Variant report
| Variant | rs73907078 |
|---|---|
| Chromosome Location | chr21:46043979-46043980 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | KAP1 | chr21:46043382-46044017 | HEK293 | kidney: | n/a | n/a |
| 2 | KAP1 | chr21:46043444-46044009 | U2OS | brain: | n/a | n/a |
| 3 | SETDB1 | chr21:46043394-46044152 | U2OS | brain: | n/a | n/a |
| 4 | KAP1 | chr21:46043170-46044238 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KRTAP10-9 | TF binding region |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs57334195 | 1.00[AMR][1000 genomes] |
| rs59256622 | 1.00[AMR][1000 genomes] |
| rs73907084 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73907085 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73907089 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73909205 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73909206 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73909214 | 1.00[AMR][1000 genomes] |
| rs73909215 | 1.00[AMR][1000 genomes] |
| rs73909222 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065798 | chr21:45941000-46097463 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv869108 | chr21:45941000-46097463 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv544476 | chr21:45941000-46097463 | Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv913950 | chr21:45985068-46097463 | Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 5 | nsv916258 | chr21:45995986-46624705 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 102 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:46018400-46048400 | Weak transcription | Right Atrium | heart |
