Variant report

Variant	rs73909539
Chromosome Location	chr21:47878307-47878308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:397)
CpG islands
(count:61)
Chromatin interactive
region (count:34)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:397 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr21:47878078-47878708	SK-N-SH_RA	brain:	n/a	n/a
2	MYC	chr21:47878080-47878311	GM12878	blood:	n/a	n/a
3	E2F4	chr21:47878043-47879108	K562	blood:	n/a	chr21:47878844-47878853 chr21:47878757-47878766 chr21:47878790-47878799 chr21:47878636-47878647 chr21:47878780-47878792
4	CEBPB	chr21:47877645-47879042	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr21:47875376-47879258	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr21:47877696-47879214	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr21:47878217-47879063	T-47D	breast:	n/a	chr21:47878839-47878855
8	ZKSCAN1	chr21:47878049-47879070	Hela-S3	cervix:	n/a	n/a
9	SIN3AK20	chr21:47877440-47879283	MCF-7	breast:	n/a	n/a
10	MBD4	chr21:47878126-47878530	HepG2	liver:	n/a	n/a
11	EGR1	chr21:47877937-47878717	K562	blood:	n/a	chr21:47878134-47878148 chr21:47878112-47878126
12	MAX	chr21:47878078-47878822	A549	lung:	n/a	n/a
13	SMC3	chr21:47878032-47879074	K562	blood:	n/a	n/a
14	SIN3AK20	chr21:47878071-47878664	HepG2	liver:	n/a	n/a
15	TCF12	chr21:47878159-47878781	A549	lung:	n/a	n/a
16	CEBPB	chr21:47878200-47878706	K562	blood:	n/a	n/a
17	BACH1	chr21:47877674-47879023	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr21:47877702-47879142	IMR90	lung:	n/a	n/a
19	YY1	chr21:47877994-47878772	ECC-1	luminal epithelium:	n/a	n/a
20	TRIM28	chr21:47877812-47878738	K562	blood:	n/a	n/a
21	CHD2	chr21:47877873-47878769	HepG2	liver:	n/a	n/a
22	NR2F2	chr21:47877610-47878835	K562	blood:	n/a	n/a
23	TBP	chr21:47877584-47878763	Hela-S3	cervix:	n/a	n/a
24	MYC	chr21:47878155-47878890	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr21:47877792-47879228	ProgFib	skin:	n/a	n/a
26	YY1	chr21:47877749-47879158	GM12878	blood:	n/a	chr21:47878836-47878847 chr21:47878844-47878853
27	WRNIP1	chr21:47877465-47878520	GM12878	blood:	n/a	n/a
28	SIN3AK20	chr21:47877906-47878792	MCF-7	breast:	n/a	n/a
29	HA-E2F1	chr21:47877982-47879117	Hela-S3	cervix:	n/a	chr21:47878844-47878853 chr21:47878757-47878766 chr21:47878790-47878799 chr21:47878780-47878792
30	POLR2A	chr21:47877868-47879157	HepG2	liver:	n/a	n/a
31	RFX5	chr21:47878297-47878933	K562	blood:	n/a	chr21:47878712-47878721 chr21:47878708-47878723
32	POLR2A	chr21:47878102-47878784	U87	brain:	n/a	n/a
33	ZBTB7A	chr21:47878020-47878714	K562	blood:	n/a	n/a
34	MAX	chr21:47877872-47879018	HepG2	liver:	n/a	n/a
35	IRF1	chr21:47877535-47879094	K562	blood:	n/a	chr21:47878715-47878729
36	MAX	chr21:47877826-47878880	A549	lung:	n/a	n/a
37	YY1	chr21:47878095-47878612	GM12891	blood:	n/a	n/a
38	POLR2A	chr21:47877580-47879196	K562	blood:	n/a	n/a
39	GTF2F1	chr21:47877519-47878763	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr21:47877747-47879242	MCF-7	breast:	n/a	n/a
41	E2F4	chr21:47878168-47878893	GM12878	blood:	n/a	chr21:47878844-47878853 chr21:47878757-47878766 chr21:47878790-47878799 chr21:47878636-47878647 chr21:47878780-47878792
42	SRF	chr21:47878297-47878693	K562	blood:	n/a	n/a
43	HDAC2	chr21:47878116-47878741	HepG2	liver:	n/a	n/a
44	E2F6	chr21:47877866-47879006	K562	blood:	n/a	chr21:47878844-47878853 chr21:47878757-47878766 chr21:47878790-47878799 chr21:47878780-47878792
45	REST	chr21:47878165-47878616	PFSK-1	brain:	n/a	n/a
46	NFYB	chr21:47878179-47878952	GM12878	blood:	n/a	n/a
47	SP1	chr21:47878214-47878946	H1-hESC	embryonic stem cell:	n/a	chr21:47878715-47878727 chr21:47878716-47878725 chr21:47878686-47878707 chr21:47878715-47878727 chr21:47878717-47878726
48	ZNF384	chr21:47878141-47879055	K562	blood:	n/a	n/a
49	POLR2A	chr21:47877769-47879190	GM15510	blood:	n/a	n/a
50	ESRRA	chr21:47877446-47879271	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr21:47878281-47878331	GM12878	blood:	n/a
2	chr21:47878281-47878331	PrEC	prostate:	n/a
3	chr21:47878281-47878331	PFSK-1	brain:	n/a
4	chr21:47878281-47878331	SK-N-MC	brain:	n/a
5	chr21:47878281-47878331	GM06990	blood:	n/a
6	chr21:47878281-47878331	HUVEC	blood vessel:	n/a
7	chr21:47878281-47878331	HCF	heart:	n/a
8	chr21:47878281-47878331	HAEpiC	amniotic membrane:	n/a
9	chr21:47878281-47878331	SAEC	small airway:	n/a
10	chr21:47878281-47878331	SKMC	muscle:	n/a
11	chr21:47878281-47878331	HepG2	liver:	n/a
12	chr21:47878281-47878331	AG09309	skin:	n/a
13	chr21:47878281-47878331	Caco-2	colon:	n/a
14	chr21:47878281-47878331	BJ	skin:	n/a
15	chr21:47878281-47878331	HEK293	kidney:	embryo
16	chr21:47878281-47878331	ovcar-3	ovarian:	n/a
17	chr21:47878281-47878331	HEEpiC	esophagus:	n/a
18	chr21:47878281-47878331	H1-hESC	embryonic stem cell:	embryo
19	chr21:47878281-47878331	Hepatocyte	liver:	n/a
20	chr21:47878281-47878331	MCF-7	breast:	n/a
21	chr21:47878281-47878331	HIPEpiC	eye:	n/a
22	chr21:47878281-47878331	BE2_C	brain:	n/a
23	chr21:47878281-47878331	NHBE	bronchial:	n/a
24	chr21:47878281-47878331	ECC-1	luminal epithelium:	n/a
25	chr21:47878281-47878331	HRE	kidney:	n/a
26	chr21:47878281-47878331	SK-N-SH_RA	brain:	n/a
27	chr21:47878281-47878331	HPAEpiC	pulmonary alveolar:	n/a
28	chr21:47878281-47878331	AG04450	lung:	fetal
29	chr21:47878281-47878331	NB4	blood:	n/a
30	chr21:47878281-47878331	CMK	blood:	n/a
31	chr21:47878281-47878331	AoSMC	blood vessel:	n/a
32	chr21:47878281-47878331	IMR90	lung:	fetal
33	chr21:47878281-47878331	HNPCEpiC	eye:	n/a
34	chr21:47878281-47878331	AG10803	skin:	n/a
35	chr21:47878281-47878331	GM12891	blood:	n/a
36	chr21:47878281-47878331	Hela-S3	cervix:	n/a
37	chr21:47878281-47878331	Jurkat	blood:	n/a
38	chr21:47878281-47878331	MCF10A-Er-Src	breast:	n/a
39	chr21:47878281-47878331	HCM	heart:	n/a
40	chr21:47878281-47878331	AG09319	gingival:	n/a
41	chr21:47878281-47878331	AG04449	skin:	fetal
42	chr21:47878281-47878331	HCPEpiC	choroid plexus:	n/a
43	chr21:47878281-47878331	T-47D	breast:	n/a
44	chr21:47878281-47878331	LNCaP	prostate:	n/a
45	chr21:47878281-47878331	HMEC	breast:	n/a
46	chr21:47878281-47878331	NHDF-neo	bronchial:	n/a
47	chr21:47878281-47878331	U87	brain:	n/a
48	chr21:47878281-47878331	K562	blood:	n/a
49	chr21:47878281-47878331	A549	lung:	n/a
50	chr21:47878281-47878331	NH-A	brain:	n/a

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:25071110..25072026-chr21:47878008..47878592,2	Hela-S3	cervix:
2	chr12:131354963..131357052-chr21:47877040..47878666,2	MCF-7	breast:
3	chr21:47743254..47746166-chr21:47876901..47880445,4	MCF-7	breast:
4	chr21:47876838..47878694-chr21:47950726..47952236,2	K562	blood:
5	chr17:57921537..57925513-chr21:47876812..47880311,4	MCF-7	breast:
6	chr21:47798424..47800527-chr21:47877024..47878528,2	MCF-7	breast:
7	chr21:47705757..47707649-chr21:47877566..47879114,2	MCF-7	breast:
8	chr15:74753422..74754147-chr21:47878066..47878650,2	Hela-S3	cervix:
9	chr21:47863005..47865990-chr21:47875934..47878581,2	MCF-7	breast:
10	chr21:47877850..47878566-chr3:111577924..111578506,2	Hela-S3	cervix:
11	chr21:47877844..47879584-chr6:47445419..47446944,2	MCF-7	breast:
12	chr21:47875258..47880014-chr21:48054452..48058643,10	K562	blood:
13	chr21:47840925..47844156-chr21:47876600..47878720,3	MCF-7	breast:
14	chr21:47877902..47878564-chr8:71314970..71315639,2	Hela-S3	cervix:
15	chr21:47857857..47859725-chr21:47876652..47878543,2	MCF-7	breast:
16	chr21:47743042..47745765-chr21:47875975..47879914,6	MCF-7	breast:
17	chr21:47647264..47648921-chr21:47877829..47879532,2	MCF-7	breast:
18	chr21:47706221..47707965-chr21:47878068..47881386,3	K562	blood:
19	chr12:14923341..14924310-chr21:47877937..47878882,2	Hela-S3	cervix:
20	chr21:47876681..47878399-chr21:47975254..47977568,2	MCF-7	breast:
21	chr21:47742824..47746367-chr21:47874951..47878920,7	K562	blood:
22	chr21:47647264..47651365-chr21:47875652..47880068,5	K562	blood:
23	chr17:58154842..58157116-chr21:47876482..47878342,2	MCF-7	breast:
24	chr19:44116910..44119168-chr21:47876840..47878656,2	MCF-7	breast:
25	chr21:47811625..47813583-chr21:47876546..47878420,2	K562	blood:
26	chr21:47647621..47651234-chr21:47875652..47881416,7	K562	blood:
27	chr14:75745162..75745662-chr21:47878134..47878672,2	Hela-S3	cervix:
28	chr21:47877118..47880921-chr21:48053345..48058142,9	K562	blood:
29	chr21:47876440..47878945-chr21:47970776..47973767,2	MCF-7	breast:
30	chr21:47743331..47747569-chr21:47874488..47878501,6	K562	blood:
31	chr21:47843264..47847636-chr21:47874814..47878644,6	K562	blood:
32	chr17:72869660..72870193-chr21:47878133..47878650,2	Hela-S3	cervix:
33	chr21:47740603..47742820-chr21:47877122..47879143,2	K562	blood:
34	chr21:47878168..47880063-chr21:48054664..48057491,4	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C21orf58-1	chr21:47877997-47878593	ENSG00000245754
2	lnc-C21orf58-1	chr21:47871407-47878519	NONHSAT083070

No data

Variant related genes	Relation type
DIP2A-IT1	TF binding region
DIP2A	TF binding region
DIP2A-IT1	CpG island
DIP2A	CpG island
ENSG00000182362	Chromatin interaction
ENSG00000160285	Chromatin interaction
ENSG00000169504	Chromatin interaction
ENSG00000160305	Chromatin interaction
ENSG00000144824	Chromatin interaction
ENSG00000160294	Chromatin interaction
ENSG00000132341	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000160299	Chromatin interaction
ENSG00000160298	Chromatin interaction
ENSG00000068097	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000215424	Chromatin interaction
ENSG00000160310	Chromatin interaction
ENSG00000267416	Chromatin interaction
ENSG00000198087	Chromatin interaction
ENSG00000197837	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000225043	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73909540	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059230	chr21:46956877-47907990	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
2	nsv544491	chr21:46956877-47907990	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
3	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
4	nsv531580	chr21:47221774-48090317	Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	n/a
5	nsv918103	chr21:47297067-48089510	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	n/a
6	nsv869002	chr21:47297268-47963186	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	n/a
7	nsv470910	chr21:47353775-48084988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
8	nsv1059118	chr21:47398331-48090457	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
9	nsv544494	chr21:47398331-48090457	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
10	nsv934264	chr21:47401083-48090317	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
11	nsv519904	chr21:47583506-47881309	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
12	nsv948761	chr21:47587940-48069930	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	n/a
13	nsv1055239	chr21:47591378-48090317	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
14	nsv544495	chr21:47591378-48090317	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
15	nsv949706	chr21:47625544-48069930	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
16	nsv529496	chr21:47634193-48090317	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
17	nsv914136	chr21:47681041-47900994	Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	n/a
18	nsv933061	chr21:47746204-48031515	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	n/a
19	nsv1062858	chr21:47750884-48091343	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
20	nsv1056321	chr21:47835146-47973412	Strong transcription Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	n/a
21	nsv917208	chr21:47836346-47988603	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	n/a
22	nsv1058397	chr21:47851176-48091343	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
23	nsv459312	chr21:47856106-47985655	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	n/a
24	nsv587998	chr21:47856106-47985655	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	n/a
25	nsv1065502	chr21:47865215-48091343	Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
26	nsv1056152	chr21:47875370-47979259	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	n/a
27	nsv1061442	chr21:47875370-48091343	Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
28	esv3337772	chr21:47877824-47880672	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	n/a
29	esv3437335	chr21:47878049-47880897	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:47875800-47878600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr21:47877000-47878400	Flanking Active TSS	Primary T cells from cord blood	blood
3	chr21:47877000-47878400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr21:47877200-47878400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr21:47877200-47878600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:47877200-47879800	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr21:47877200-47880200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr21:47877200-47880200	Active TSS	A549	lung
9	chr21:47877200-47880400	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr21:47877400-47878400	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr21:47877400-47878400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr21:47877400-47878400	Flanking Active TSS	NH-A	brain
13	chr21:47877400-47878600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr21:47877400-47878600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr21:47877400-47879600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr21:47877400-47880000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr21:47877400-47880200	Active TSS	Fetal Kidney	kidney
18	chr21:47877400-47880200	Active TSS	NHLF	lung
19	chr21:47877400-47880400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr21:47877600-47878400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr21:47877600-47878400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr21:47877600-47878400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr21:47877600-47878400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr21:47877600-47878600	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr21:47877600-47878600	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr21:47877600-47879200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr21:47877600-47879600	Active TSS	Fetal Muscle Trunk	muscle
28	chr21:47877600-47879600	Active TSS	Gastric	stomach
29	chr21:47877600-47879800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr21:47877600-47880000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr21:47877600-47880200	Active TSS	Left Ventricle	heart
32	chr21:47877600-47880200	Active TSS	Ovary	ovary
33	chr21:47877600-47880200	Active TSS	Psoas Muscle	Psoas
34	chr21:47877600-47880400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr21:47877600-47880400	Active TSS	HSMMtube	muscle
36	chr21:47877600-47880600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr21:47877800-47878400	Flanking Active TSS	Colonic Mucosa	Colon
38	chr21:47877800-47879600	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr21:47877800-47879600	Active TSS	Sigmoid Colon	Sigmoid Colon
40	chr21:47877800-47879800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr21:47877800-47879800	Active TSS	Aorta	Aorta
42	chr21:47877800-47879800	Active TSS	GM12878-XiMat	blood
43	chr21:47877800-47880000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr21:47877800-47880000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr21:47877800-47880000	Active TSS	H9 Cell Line	embryonic stem cell
46	chr21:47877800-47880000	Active TSS	Small Intestine	intestine
47	chr21:47877800-47880200	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr21:47877800-47880200	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr21:47877800-47880400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr21:47877800-47880600	Active TSS	NHDF-Ad	bronchial

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