Variant report

Variant	rs73912613
Chromosome Location	chr2:7235219-7235220
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58734635	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58972777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59638958	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73912612	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73912615	1.00[AMR][1000 genomes]
rs73912619	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437276	chr2:7229170-7246387	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437277	chr2:7229170-7246387	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3459456	chr2:7229849-7235881	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3459455	chr2:7229873-7235699	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3459457	chr2:7229873-7235699	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv15834	chr2:7230036-7235715	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7224600-7237400	Weak transcription	Dnd41	blood
2	chr2:7226400-7235600	Weak transcription	Spleen	Spleen
3	chr2:7226400-7237600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:7232000-7237600	Weak transcription	Ovary	ovary
5	chr2:7233600-7235600	Enhancers	Fetal Kidney	kidney
6	chr2:7233800-7236200	Weak transcription	Lung	lung
7	chr2:7233800-7237800	Weak transcription	Gastric	stomach
8	chr2:7234000-7235400	Enhancers	Fetal Intestine Large	intestine
9	chr2:7234400-7237400	Weak transcription	Fetal Heart	heart
10	chr2:7234600-7236800	Weak transcription	NH-A	brain
11	chr2:7234600-7237200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:7234600-7237600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:7234800-7235400	Enhancers	Duodenum Mucosa	Duodenum
14	chr2:7234800-7236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:7234800-7237600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:7234800-7237600	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:7234800-7249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:7235000-7237600	Weak transcription	Primary T cells from cord blood	blood
19	chr2:7235200-7237600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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