Variant report

Variant	rs73913924
Chromosome Location	chr2:10077453-10077454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10077387..10079466-chr2:10182113..10184414,2	MCF-7	breast:
2	chr2:10077034..10079332-chr2:10081722..10084624,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF1B-2	chr2:10076489-10079719	ENSG00000269973.1

Variant related genes	Relation type
ENSG00000172059	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11895989	1.00[AFR][1000 genomes]
rs56080224	1.00[AFR][1000 genomes]
rs59396686	1.00[AFR][1000 genomes]
rs73913905	0.83[AFR][1000 genomes]
rs73913907	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948591	chr2:9922257-10141191	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv1843231	chr2:9979766-10141191	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1002769	chr2:10064511-10157028	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv3459461	chr2:10076525-10077928	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3459460	chr2:10076571-10077871	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3459462	chr2:10076575-10077901	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3459464	chr2:10076575-10077901	Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9993800-10079600	Weak transcription	Gastric	stomach
2	chr2:10030600-10080600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:10037200-10080400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:10038600-10079800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:10038600-10081400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:10045800-10079600	Weak transcription	Esophagus	oesophagus
7	chr2:10047200-10080000	Weak transcription	Colonic Mucosa	Colon
8	chr2:10049400-10081000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:10049600-10081200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:10053200-10077800	Weak transcription	Liver	Liver
11	chr2:10054800-10079000	Weak transcription	Fetal Kidney	kidney
12	chr2:10055000-10080800	Weak transcription	Pancreas	Pancrea
13	chr2:10055000-10080800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:10055000-10081800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr2:10055200-10079600	Weak transcription	K562	blood
16	chr2:10055200-10080800	Weak transcription	HMEC	breast
17	chr2:10059000-10080600	Weak transcription	HSMMtube	muscle
18	chr2:10059400-10081200	Weak transcription	GM12878-XiMat	blood
19	chr2:10060600-10080200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:10061000-10079600	Weak transcription	HepG2	liver
21	chr2:10061000-10080800	Weak transcription	Brain Germinal Matrix	brain
22	chr2:10061000-10080800	Weak transcription	NH-A	brain
23	chr2:10061000-10080800	Weak transcription	NHEK	skin
24	chr2:10061400-10077800	Weak transcription	Primary B cells from cord blood	blood
25	chr2:10061600-10077800	Weak transcription	Ovary	ovary
26	chr2:10062600-10080200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:10063000-10080800	Weak transcription	NHLF	lung
28	chr2:10064200-10079400	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:10064200-10080200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:10064600-10079200	Weak transcription	Fetal Brain Female	brain
31	chr2:10065000-10080800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:10069600-10079800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:10070800-10080800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr2:10072600-10077800	Strong transcription	Fetal Stomach	stomach
35	chr2:10073400-10077800	Weak transcription	Left Ventricle	heart
36	chr2:10073400-10078800	Weak transcription	Adipose Nuclei	Adipose
37	chr2:10073400-10081800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr2:10073400-10084400	Weak transcription	Lung	lung
39	chr2:10073600-10088800	Weak transcription	Spleen	Spleen
40	chr2:10073800-10077600	Weak transcription	Right Ventricle	heart
41	chr2:10073800-10080000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:10073800-10080800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:10073800-10080800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:10073800-10081000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr2:10073800-10082000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:10074000-10078400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr2:10074000-10079200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:10074000-10079200	Weak transcription	HUVEC	blood vessel
49	chr2:10074000-10079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr2:10074000-10079600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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