Variant report

Variant	rs73917910
Chromosome Location	chr2:10852449-10852450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10839405..10841919-chr2:10851119..10853267,3	K562	blood:
2	chr2:10852173..10853901-chr2:10864182..10867105,2	K562	blood:
3	chr2:10850840..10852513-chr2:10914222..10915993,2	MCF-7	breast:
4	chr2:10851166..10853921-chr2:10855403..10857190,3	K562	blood:
5	chr2:10849877..10852516-chr2:10854980..10857706,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16855524	0.90[AFR][1000 genomes]
rs16856397	1.00[AMR][1000 genomes]
rs73914804	0.94[AFR][1000 genomes]
rs73914805	0.94[AFR][1000 genomes]
rs73914806	0.94[AFR][1000 genomes]
rs73914808	0.80[AFR][1000 genomes]
rs73917006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10850000-10852600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:10851400-10852800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:10852000-10853000	Enhancers	Placenta	Placenta
4	chr2:10852400-10852600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr2:10852400-10852600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:10852400-10852600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr2:10852400-10852600	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr2:10852400-10852800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:10852400-10852800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:10852400-10852800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:10852400-10852800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:10852400-10852800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr2:10852400-10852800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:10852400-10852800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr2:10852400-10852800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr2:10852400-10852800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:10852400-10852800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr2:10852400-10852800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:10852400-10852800	Enhancers	Esophagus	oesophagus
20	chr2:10852400-10852800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr2:10852400-10852800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr2:10852400-10852800	Enhancers	Spleen	Spleen
23	chr2:10852400-10852800	Bivalent Enhancer	K562	blood
24	chr2:10852400-10852800	Flanking Active TSS	NHEK	skin
25	chr2:10852400-10853000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:10852400-10853000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr2:10852400-10853000	Enhancers	Primary hematopoietic stem cells	blood
28	chr2:10852400-10853000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr2:10852400-10853000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr2:10852400-10853000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr2:10852400-10853000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:10852400-10853000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:10852400-10853000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:10852400-10853000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:10852400-10853000	Enhancers	Fetal Thymus	thymus
36	chr2:10852400-10853000	Bivalent Enhancer	Dnd41	blood
37	chr2:10852400-10853000	Enhancers	HMEC	breast
38	chr2:10852400-10853000	Enhancers	HUVEC	blood vessel

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