Variant report

Variant	rs73922832
Chromosome Location	chr19:19312537-19312538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19300955..19305521-chr19:19311679..19315747,10	MCF-7	breast:
2	chr19:19289333..19292263-chr19:19310891..19313561,2	K562	blood:
3	chr19:19307070..19310712-chr19:19311051..19314432,7	MCF-7	breast:
4	chr19:19312433..19314874-chr19:19432298..19433867,2	MCF-7	breast:
5	chr19:19307535..19311874-chr19:19311949..19315894,9	MCF-7	breast:
6	chr19:19299448..19305567-chr19:19306959..19319217,21	K562	blood:
7	chr19:19300744..19305499-chr19:19311426..19319217,10	K562	blood:

Variant related genes	Relation type
ENSG00000064489	Chromatin interaction
ENSG00000064490	Chromatin interaction
ENSG00000129933	Chromatin interaction
ENSG00000213999	Chromatin interaction
ENSG00000254901	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10414307	0.83[AMR][1000 genomes]
rs55840140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56800592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57379914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59210450	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60103595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255275	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7256074	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73922820	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73922826	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73922828	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73922830	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73922833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19304200-19313400	Weak transcription	Fetal Kidney	kidney
2	chr19:19304200-19313400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:19304600-19312600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr19:19304800-19313000	Weak transcription	Stomach Mucosa	stomach
5	chr19:19304800-19313000	Weak transcription	HSMM	muscle
6	chr19:19304800-19313200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:19304800-19313600	Weak transcription	Small Intestine	intestine
8	chr19:19305000-19313400	Weak transcription	Fetal Heart	heart
9	chr19:19305400-19313200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr19:19305600-19312800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:19305600-19313000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:19305600-19313000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr19:19305600-19313000	Weak transcription	Right Atrium	heart
14	chr19:19305600-19313200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:19305600-19313200	Weak transcription	Psoas Muscle	Psoas
16	chr19:19305800-19312600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr19:19305800-19312600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr19:19305800-19313000	Strong transcription	Fetal Muscle Leg	muscle
19	chr19:19305800-19313000	Strong transcription	Fetal Stomach	stomach
20	chr19:19305800-19313200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr19:19306200-19312600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:19306800-19313000	Strong transcription	Fetal Intestine Small	intestine
23	chr19:19307000-19312800	Strong transcription	Adipose Nuclei	Adipose
24	chr19:19307000-19313000	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr19:19307000-19313400	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr19:19307400-19312600	Strong transcription	Spleen	Spleen
27	chr19:19307800-19312800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr19:19307800-19312800	Strong transcription	Colonic Mucosa	Colon
29	chr19:19308200-19313000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:19308200-19313000	Weak transcription	A549	lung
31	chr19:19308400-19313200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr19:19309400-19313200	Weak transcription	Brain Substantia Nigra	brain
33	chr19:19309600-19312600	Weak transcription	NHDF-Ad	bronchial
34	chr19:19309600-19313000	Weak transcription	Fetal Lung	lung
35	chr19:19309600-19313200	Weak transcription	NH-A	brain
36	chr19:19309800-19313000	Weak transcription	HMEC	breast
37	chr19:19309800-19313200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr19:19309800-19313200	Weak transcription	Colon Smooth Muscle	Colon
39	chr19:19310000-19313000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr19:19310000-19313400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr19:19310200-19312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr19:19310200-19312600	Weak transcription	K562	blood
43	chr19:19310200-19313200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr19:19310200-19313200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr19:19310600-19313000	Weak transcription	Primary B cells from cord blood	blood
46	chr19:19310600-19313000	Weak transcription	Right Ventricle	heart
47	chr19:19310600-19313200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr19:19310600-19313200	Weak transcription	Brain Angular Gyrus	brain
49	chr19:19310600-19313200	Weak transcription	Brain Anterior Caudate	brain
50	chr19:19310600-19313200	Weak transcription	Brain Cingulate Gyrus	brain

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