Variant report

Variant	rs73923158
Chromosome Location	chr19:18870724-18870725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:18817809..18819429-chr19:18870593..18873534,2	K562	blood:
2	chr19:18870496..18872757-chr19:18957922..18960275,2	MCF-7	breast:
3	chr19:18870191..18872227-chr19:18994758..18997312,2	K562	blood:

Variant related genes	Relation type
ENSG00000223802	Chromatin interaction
ENSG00000005007	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16982626	0.89[AFR][1000 genomes]
rs58794893	0.89[AFR][1000 genomes]
rs73923156	1.00[AFR][1000 genomes]
rs73923157	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057795	chr19:18453362-18883844	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv543925	chr19:18453362-18883844	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911282	chr19:18624964-18928480	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18844200-18872800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr19:18844600-18872800	Weak transcription	NH-A	brain
3	chr19:18844800-18871800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr19:18846800-18871600	Weak transcription	Fetal Brain Male	brain
5	chr19:18846800-18872400	Weak transcription	Colon Smooth Muscle	Colon
6	chr19:18849200-18873000	Weak transcription	Psoas Muscle	Psoas
7	chr19:18854400-18873200	Weak transcription	NHLF	lung
8	chr19:18854600-18872800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr19:18854600-18895800	Weak transcription	Right Atrium	heart
10	chr19:18854800-18872800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr19:18856600-18872200	Weak transcription	Fetal Heart	heart
12	chr19:18857200-18873600	Weak transcription	Fetal Kidney	kidney
13	chr19:18861200-18872600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr19:18861200-18873000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr19:18861600-18873000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:18861600-18873000	Weak transcription	Brain Angular Gyrus	brain
17	chr19:18861600-18875200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr19:18861800-18872800	Weak transcription	Brain Substantia Nigra	brain
19	chr19:18862000-18872600	Weak transcription	Liver	Liver
20	chr19:18862000-18872600	Weak transcription	Brain Anterior Caudate	brain
21	chr19:18862000-18872800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr19:18862000-18875200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr19:18862600-18872800	Weak transcription	Right Ventricle	heart
24	chr19:18862600-18888400	Weak transcription	Aorta	Aorta
25	chr19:18862800-18873000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr19:18863200-18871800	Strong transcription	Fetal Stomach	stomach
27	chr19:18864600-18871800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr19:18864600-18872600	Weak transcription	Colonic Mucosa	Colon
29	chr19:18864600-18873200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr19:18864600-18873200	Weak transcription	Osteobl	bone
31	chr19:18864600-18887400	Weak transcription	Primary B cells from cord blood	blood
32	chr19:18864800-18873000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:18864800-18875200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr19:18865000-18885000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr19:18865200-18872000	Weak transcription	Pancreas	Pancrea
36	chr19:18865200-18872600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr19:18865200-18873000	Weak transcription	Left Ventricle	heart
38	chr19:18865400-18872200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr19:18865400-18872400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:18865400-18872600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr19:18865400-18872600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr19:18865400-18872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:18865400-18875200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr19:18865400-18879600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr19:18865400-18880000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr19:18865400-18887400	Weak transcription	Primary T cells from cord blood	blood
47	chr19:18865600-18871800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr19:18865600-18872400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr19:18865600-18872600	Weak transcription	HSMM	muscle
50	chr19:18865600-18873200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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