Variant report

Variant	rs73927917
Chromosome Location	chr19:35591643-35591644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4346306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73927916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs897760	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911612	chr19:35501051-35602498	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
3	nsv911614	chr19:35570307-35648365	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
4	nsv911615	chr19:35577870-35648365	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
5	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv911617	chr19:35587791-35642297	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35582200-35605600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:35582600-35601600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr19:35587200-35596200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr19:35587600-35596400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:35589600-35592000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:35589800-35591800	Enhancers	HepG2	liver
7	chr19:35590000-35605400	Weak transcription	Right Atrium	heart
8	chr19:35590200-35595600	Weak transcription	Brain Angular Gyrus	brain
9	chr19:35590600-35596200	Weak transcription	Esophagus	oesophagus
10	chr19:35590800-35591800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr19:35591000-35595000	Weak transcription	Brain Substantia Nigra	brain
12	chr19:35591000-35596200	Weak transcription	Pancreas	Pancrea
13	chr19:35591400-35592400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr19:35591600-35591800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr19:35591600-35592400	Enhancers	Brain Anterior Caudate	brain
16	chr19:35591600-35592400	Genic enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links