Variant report

Variant	rs73928360
Chromosome Location	chr19:36402309-36402310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:85)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:85 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:36402129-36402481	GM12878	blood:	n/a	n/a
2	MAZ	chr19:36402166-36402339	K562	blood:	n/a	n/a
3	CTCF	chr19:36402174-36402374	HepG2	liver:	n/a	n/a
4	SMC3	chr19:36402196-36402378	HepG2	liver:	n/a	n/a
5	CTCF	chr19:36402192-36402356	GM12892	blood:	n/a	n/a
6	CTCF	chr19:36402200-36402350	A549	lung:	n/a	n/a
7	RAD21	chr19:36402022-36402400	HepG2	liver:	n/a	n/a
8	CTCF	chr19:36402128-36402394	A549	lung:	n/a	n/a
9	CTCF	chr19:36402055-36402487	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr19:36402099-36402514	HCT-116	colon:	n/a	chr19:36402454-36402467
11	CTCF	chr19:36402200-36402350	WERI-Rb-1	eye:	n/a	n/a
12	RUNX3	chr19:36402118-36402601	GM12878	blood:	n/a	n/a
13	ZMIZ1	chr19:36402212-36402313	K562	blood:	n/a	n/a
14	CTCF	chr19:36402097-36402457	K562	blood:	n/a	n/a
15	CTCF	chr19:36402236-36402313	Lung_OC	lung:	n/a	n/a
16	CTCF	chr19:36402100-36402461	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr19:36402160-36402310	BE2_C	brain:	n/a	n/a
18	RAD21	chr19:36402019-36402454	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr19:36402117-36402469	H1-hESC	embryonic stem cell:	n/a	chr19:36402454-36402467
20	CTCF	chr19:36402220-36402370	HFF-Myc	foreskin:	n/a	n/a
21	CTCF	chr19:36402212-36402309	Pancreas_OC	pancreas:	n/a	n/a
22	CTCF	chr19:36402239-36402341	HUVEC	blood vessel:	n/a	n/a
23	CTCF	chr19:36402248-36402319	MCF-7	breast:	n/a	n/a
24	RUNX3	chr19:36402141-36402590	GM12878	blood:	n/a	n/a
25	CTCF	chr19:36402220-36402370	NB4	blood:	n/a	n/a
26	CTCF	chr19:36402198-36402360	HepG2	liver:	n/a	n/a
27	POU2F2	chr19:36402170-36402554	GM12878	blood:	n/a	n/a
28	YY1	chr19:36402123-36402316	GM12878	blood:	n/a	n/a
29	CTCF	chr19:36402220-36402370	K562	blood:	n/a	n/a
30	RAD21	chr19:36402166-36402369	HepG2	liver:	n/a	n/a
31	CTCF	chr19:36402180-36402330	Caco-2	colon:	n/a	n/a
32	CTCF	chr19:36402178-36402381	K562	blood:	n/a	n/a
33	JUND	chr19:36402173-36402346	K562	blood:	n/a	n/a
34	CTCF	chr19:36402240-36402390	GM12869	blood:	n/a	n/a
35	ELF1	chr19:36402135-36402332	K562	blood:	n/a	n/a
36	CTCF	chr19:36402208-36402376	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr19:36402260-36402410	HepG2	liver:	n/a	n/a
38	CTCF	chr19:36402200-36402350	NHLF	lung:	n/a	n/a
39	STAT3	chr19:36402278-36402500	MCF10A-Er-Src	breast:	n/a	n/a
40	CTCF	chr19:36402104-36402355	K562	blood:	n/a	n/a
41	RAD21	chr19:36402102-36402519	SK-N-SH	brain:	n/a	chr19:36402454-36402467
42	CTCF	chr19:36402220-36402370	GM12872	blood:	n/a	n/a
43	CTCF	chr19:36402300-36402450	GM12864	blood:	n/a	n/a
44	ZBTB7A	chr19:36402166-36402354	K562	blood:	n/a	n/a
45	RAD21	chr19:36402101-36402530	A549	lung:	n/a	chr19:36402454-36402467
46	CTCF	chr19:36402160-36402310	HCPEpiC	choroid plexus:	n/a	n/a
47	CTCF	chr19:36402160-36402310	SK-N-SH_RA	brain:	n/a	n/a
48	CTCF	chr19:36402180-36402330	HEK293	kidney:	n/a	n/a
49	CTCF	chr19:36402147-36402509	K562	blood:	n/a	n/a
50	CTCF	chr19:36402178-36402381	GM19238	blood:	n/a	n/a

No data

Variant related genes	Relation type
TYROBP	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56175734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56410145	1.00[AFR][1000 genomes]
rs57079408	1.00[AMR][1000 genomes]
rs60390410	1.00[AMR][1000 genomes]
rs73928330	1.00[AMR][1000 genomes]
rs73928337	1.00[AMR][1000 genomes]
rs73928338	1.00[AMR][1000 genomes]
rs73928339	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36394800-36404000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:36395000-36402800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:36398400-36402800	Weak transcription	A549	lung
4	chr19:36399000-36406600	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:36399200-36402800	Weak transcription	Pancreas	Pancrea
6	chr19:36399400-36402800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr19:36400000-36403200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr19:36400200-36402400	Weak transcription	Liver	Liver
9	chr19:36400200-36402800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:36400200-36403200	Enhancers	Primary B cells from cord blood	blood
11	chr19:36400800-36402400	Enhancers	Primary hematopoietic stem cells	blood
12	chr19:36400800-36402400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:36400800-36402800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:36400800-36404600	Enhancers	GM12878-XiMat	blood
15	chr19:36400800-36406800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr19:36400800-36407600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr19:36400800-36413400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:36401000-36402800	Weak transcription	K562	blood
19	chr19:36401000-36403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:36401000-36403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr19:36401000-36405800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr19:36402200-36402400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr19:36402200-36402400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr19:36402200-36402600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr19:36402200-36403000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr19:36402200-36403000	Enhancers	Fetal Thymus	thymus
27	chr19:36402200-36403000	Enhancers	Spleen	Spleen
28	chr19:36402200-36403000	Enhancers	NHEK	skin
29	chr19:36402200-36403200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr19:36402200-36403200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr19:36402200-36403200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr19:36402200-36403200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr19:36402200-36403200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr19:36402200-36403200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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