Variant report

Variant	rs73928607
Chromosome Location	chr19:36858984-36858985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55788063	1.00[AMR][1000 genomes]
rs55914742	1.00[AMR][1000 genomes]
rs58509998	1.00[AMR][1000 genomes]
rs59315532	1.00[AMR][1000 genomes]
rs73928639	1.00[AMR][1000 genomes]
rs73931512	1.00[AMR][1000 genomes]
rs7507569	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv174	chr19:36831719-36865415	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36827200-36862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr19:36836400-36868000	Weak transcription	Psoas Muscle	Psoas
7	chr19:36836600-36863400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
9	chr19:36842400-36861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr19:36844200-36868800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:36845800-36859200	Weak transcription	Fetal Thymus	thymus
12	chr19:36846600-36866400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:36847200-36859200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr19:36847200-36859800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr19:36847400-36862200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr19:36848200-36860200	Weak transcription	NHDF-Ad	bronchial
17	chr19:36848400-36861000	Weak transcription	NH-A	brain
18	chr19:36848800-36862000	Weak transcription	Hela-S3	cervix
19	chr19:36850000-36868000	Weak transcription	Fetal Heart	heart
20	chr19:36850400-36859200	Strong transcription	Fetal Intestine Large	intestine
21	chr19:36850800-36862000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr19:36851800-36863600	Weak transcription	Fetal Kidney	kidney
23	chr19:36852200-36867600	Weak transcription	HepG2	liver
24	chr19:36854200-36859800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr19:36854400-36859000	ZNF genes & repeats	A549	lung
26	chr19:36854400-36859000	Strong transcription	Dnd41	blood
27	chr19:36854400-36859200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:36854400-36859600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
29	chr19:36854400-36859600	Strong transcription	Fetal Stomach	stomach
30	chr19:36854400-36862000	ZNF genes & repeats	Liver	Liver
31	chr19:36854400-36862600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr19:36854600-36859000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:36854600-36859000	ZNF genes & repeats	Primary T cells from cord blood	blood
34	chr19:36854600-36859200	Strong transcription	Ovary	ovary
35	chr19:36854600-36859800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr19:36854800-36861200	Strong transcription	Brain Germinal Matrix	brain
37	chr19:36855000-36859000	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr19:36855000-36859000	Strong transcription	Brain Angular Gyrus	brain
39	chr19:36855000-36859000	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr19:36855000-36859400	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr19:36855000-36859800	Strong transcription	Fetal Brain Female	brain
42	chr19:36855000-36859800	ZNF genes & repeats	Lung	lung
43	chr19:36855000-36861600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
44	chr19:36855000-36862200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
45	chr19:36855200-36859000	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr19:36855200-36860400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr19:36855400-36859000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr19:36855400-36860600	Weak transcription	HSMM	muscle
49	chr19:36855600-36859000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr19:36855600-36859600	Strong transcription	Duodenum Smooth Muscle	Duodenum

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