Variant report

Variant	rs73930245
Chromosome Location	chr19:39481701-39481702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39463902..39468166-chr19:39481620..39485046,3	MCF-7	breast:
2	chr19:39480024..39481800-chr19:39521325..39523355,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269190	Chromatin interaction
ENSG00000161243	Chromatin interaction

rs_ID	r²[population]
rs10401148	0.81[AFR][1000 genomes]
rs10409359	0.84[AMR][1000 genomes]
rs10415871	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10416552	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57439984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73930244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39479000-39483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr19:39479600-39482800	Enhancers	Placenta	Placenta
3	chr19:39479800-39481800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:39480000-39483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:39480200-39481800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:39480200-39481800	Weak transcription	Hela-S3	cervix
8	chr19:39480200-39481800	Weak transcription	HSMM	muscle
9	chr19:39480200-39483800	Weak transcription	HSMMtube	muscle
10	chr19:39480200-39486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr19:39480800-39481800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr19:39480800-39482600	Bivalent Enhancer	HepG2	liver
13	chr19:39481000-39481800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
15	chr19:39481400-39482200	Enhancers	Fetal Muscle Leg	muscle
16	chr19:39481600-39481800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr19:39481600-39482200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr19:39481600-39482200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr19:39481600-39482200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:39481600-39482200	Enhancers	Adipose Nuclei	Adipose
21	chr19:39481600-39482200	Enhancers	A549	lung
22	chr19:39481600-39482200	Enhancers	NHDF-Ad	bronchial
23	chr19:39481600-39482400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr19:39481600-39482400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr19:39481600-39482400	Enhancers	Osteobl	bone
26	chr19:39481600-39482600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:39481600-39484400	Enhancers	HMEC	breast

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