Variant report

Variant	rs73931241
Chromosome Location	chr19:36161071-36161072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36153170..36155619-chr19:36159391..36161425,2	MCF-7	breast:
2	chr19:36159215..36161380-chr19:36163087..36164675,2	K562	blood:

Variant related genes	Relation type
ENSG00000226510	Chromatin interaction
ENSG00000266455	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv543995	chr19:36139204-36203592	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
6	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
7	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
8	esv3375418	chr19:36160337-36162885	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv3519951	chr19:36160612-36162660	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	esv3519954	chr19:36160612-36162660	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36140400-36164000	Weak transcription	Right Atrium	heart
2	chr19:36149600-36164000	Weak transcription	HMEC	breast
3	chr19:36149800-36161600	Weak transcription	Osteobl	bone
4	chr19:36149800-36163400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr19:36152800-36162600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:36153000-36164000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr19:36155600-36164000	Weak transcription	HSMM	muscle
8	chr19:36156200-36164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr19:36156600-36164200	Weak transcription	Gastric	stomach
10	chr19:36156800-36164000	Weak transcription	Spleen	Spleen
11	chr19:36157200-36164000	Weak transcription	Esophagus	oesophagus
12	chr19:36157400-36164200	Weak transcription	Right Ventricle	heart
13	chr19:36157600-36161800	Weak transcription	Thymus	Thymus
14	chr19:36157800-36164000	Weak transcription	Pancreas	Pancrea
15	chr19:36159600-36164000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:36160000-36163800	Enhancers	HepG2	liver
17	chr19:36160600-36161200	Enhancers	Fetal Intestine Small	intestine
18	chr19:36160800-36161200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:36160800-36161200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:36160800-36161200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
21	chr19:36161000-36161200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr19:36161000-36161200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr19:36161000-36161200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:36161000-36161200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
25	chr19:36161000-36161200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
26	chr19:36161000-36161200	Bivalent Enhancer	A549	lung
27	chr19:36161000-36161200	Enhancers	K562	blood

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