Variant report

Variant	rs73931485
Chromosome Location	chr19:41931558-41931559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41859535..41862336-chr19:41931235..41934067,2	MCF-7	breast:
2	chr19:41928996..41931842-chr19:41934329..41936851,2	MCF-7	breast:
3	chr19:41855338..41857886-chr19:41930107..41932844,2	K562	blood:
4	chr19:41913241..41916784-chr19:41931234..41935699,5	MCF-7	breast:
5	chr19:41928851..41930811-chr19:41931132..41933140,2	K562	blood:
6	chr19:41902636..41905103-chr19:41930716..41934044,4	MCF-7	breast:
7	chr19:41930070..41932098-chr19:41944342..41947114,3	K562	blood:

Variant related genes	Relation type
ENSG00000248098	Chromatin interaction
ENSG00000255730	Chromatin interaction
ENSG00000177191	Chromatin interaction
ENSG00000105341	Chromatin interaction
ENSG00000077348	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000105329	Chromatin interaction

rs_ID	r²[population]
rs58959515	0.91[AFR][1000 genomes]
rs60715253	0.91[AFR][1000 genomes]
rs73931484	0.83[AFR][1000 genomes]
rs73931486	0.91[AFR][1000 genomes]
rs73931488	0.91[AFR][1000 genomes]
rs73931491	0.83[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41913800-41932600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr19:41915200-41932600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:41915400-41932800	Weak transcription	Hela-S3	cervix
4	chr19:41915600-41932800	Weak transcription	NH-A	brain
5	chr19:41916000-41932000	Strong transcription	Fetal Stomach	stomach
6	chr19:41916000-41932400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr19:41916200-41932000	Weak transcription	HUVEC	blood vessel
8	chr19:41916400-41931600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:41916400-41932000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr19:41916400-41932600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr19:41916400-41932800	Strong transcription	Brain Germinal Matrix	brain
12	chr19:41916400-41932800	Strong transcription	Fetal Brain Female	brain
13	chr19:41916400-41933000	Strong transcription	Thymus	Thymus
14	chr19:41916800-41932200	Strong transcription	Primary T cells from cord blood	blood
15	chr19:41916800-41932200	Strong transcription	Ovary	ovary
16	chr19:41917000-41932000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:41918200-41932000	Weak transcription	NHEK	skin
18	chr19:41918200-41932200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:41918200-41932400	Weak transcription	Right Atrium	heart
20	chr19:41918200-41932800	Strong transcription	Brain Hippocampus Middle	brain
21	chr19:41918400-41932800	Strong transcription	Brain Cingulate Gyrus	brain
22	chr19:41918600-41932400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr19:41918600-41932800	Strong transcription	Brain Angular Gyrus	brain
24	chr19:41918800-41931600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:41918800-41932600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:41918800-41932800	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr19:41919000-41931600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr19:41919200-41931800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr19:41921200-41933000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:41921400-41932000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr19:41921400-41932200	Weak transcription	NHDF-Ad	bronchial
32	chr19:41924200-41932000	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr19:41924400-41931600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr19:41924400-41931800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr19:41924400-41932000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:41924400-41932400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr19:41924600-41933000	Strong transcription	Brain Substantia Nigra	brain
38	chr19:41924800-41932400	Strong transcription	Dnd41	blood
39	chr19:41924800-41933000	Strong transcription	A549	lung
40	chr19:41925600-41933400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr19:41926600-41932800	Weak transcription	Fetal Kidney	kidney
42	chr19:41926600-41932800	Genic enhancers	Spleen	Spleen
43	chr19:41926600-41933000	Weak transcription	Fetal Brain Male	brain
44	chr19:41926800-41932600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr19:41927000-41932200	Weak transcription	HMEC	breast
46	chr19:41927000-41932400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr19:41927000-41932800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr19:41927200-41931800	Strong transcription	Fetal Thymus	thymus
49	chr19:41927400-41932600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr19:41927400-41932600	Strong transcription	Liver	Liver

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