Variant report

Variant	rs73932857
Chromosome Location	chr19:51685544-51685545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11879439	0.83[AMR][1000 genomes]
rs11882420	1.00[AMR][1000 genomes]
rs56704318	1.00[AMR][1000 genomes]
rs73932856	0.89[AFR][1000 genomes]
rs73932866	1.00[AMR][1000 genomes]
rs73932871	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51684600-51685800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51684800-51685600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:51684800-51687000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:51685000-51685600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr19:51685000-51685600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr19:51685000-51688600	Enhancers	Primary hematopoietic stem cells	blood
7	chr19:51685200-51685600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr19:51685200-51685600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:51685200-51685600	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr19:51685200-51685800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr19:51685200-51685800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:51685400-51685600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr19:51685400-51685600	Enhancers	Esophagus	oesophagus
14	chr19:51685400-51685600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr19:51685400-51685800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr19:51685400-51685800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:51685400-51686400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr19:51685400-51687000	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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