Variant report

Variant	rs73932974
Chromosome Location	chr2:50406280-50406281
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10490238	0.80[AFR][1000 genomes]
rs1520520	0.82[AFR][1000 genomes]
rs17039988	0.92[AFR][1000 genomes]
rs17039989	0.82[AFR][1000 genomes]
rs17039994	0.85[AFR][1000 genomes]
rs17040158	0.82[AFR][1000 genomes]
rs28491293	0.88[AFR][1000 genomes]
rs56254849	0.80[AFR][1000 genomes]
rs56811855	0.80[AFR][1000 genomes]
rs58177353	0.80[AFR][1000 genomes]
rs60140891	0.80[AFR][1000 genomes]
rs60761685	0.80[AFR][1000 genomes]
rs60835435	0.80[AFR][1000 genomes]
rs61614884	0.82[AFR][1000 genomes]
rs73930303	0.82[AFR][1000 genomes]
rs73930306	0.80[AFR][1000 genomes]
rs73930307	0.80[AFR][1000 genomes]
rs73932939	0.87[AFR][1000 genomes]
rs73932950	0.92[AFR][1000 genomes]
rs73932951	0.82[AFR][1000 genomes]
rs73932982	0.82[AFR][1000 genomes]
rs73932984	0.82[AFR][1000 genomes]
rs73932985	0.82[AFR][1000 genomes]
rs7423347	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1002344	chr2:50326207-50518933	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv535692	chr2:50326207-50518933	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv492164	chr2:50399251-51029090	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50404800-50406600	Enhancers	Fetal Brain Male	brain
2	chr2:50405000-50406400	Enhancers	Fetal Brain Female	brain

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