Variant report

Variant	rs73933906
Chromosome Location	chr19:42302450-42302451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10406901	1.00[EUR][1000 genomes]
rs10418786	1.00[EUR][1000 genomes]
rs16975478	1.00[EUR][1000 genomes]
rs2191140	1.00[EUR][1000 genomes]
rs55711976	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56825675	0.81[AMR][1000 genomes]
rs60395739	1.00[EUR][1000 genomes]
rs61736642	1.00[EUR][1000 genomes]
rs61737014	1.00[AMR][1000 genomes]
rs61737015	0.84[AMR][1000 genomes]
rs61737016	0.84[AMR][1000 genomes]
rs61737019	0.84[AMR][1000 genomes]
rs61738269	0.84[AMR][1000 genomes]
rs61738270	0.84[AMR][1000 genomes]
rs7255488	1.00[EUR][1000 genomes]
rs73545183	1.00[EUR][1000 genomes]
rs73933904	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73933905	1.00[EUR][1000 genomes]
rs930103	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42290200-42305200	Weak transcription	Fetal Thymus	thymus
2	chr19:42297000-42303000	Weak transcription	Esophagus	oesophagus
3	chr19:42298400-42303600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr19:42298800-42307400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr19:42299000-42305000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:42299000-42305200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr19:42300000-42303800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr19:42300800-42303800	Active TSS	Primary hematopoietic stem cells	blood
9	chr19:42300800-42305000	Active TSS	Primary B cells from cord blood	blood
10	chr19:42300800-42305200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr19:42301600-42305000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr19:42301600-42306600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr19:42302200-42303400	Enhancers	GM12878-XiMat	blood
14	chr19:42302400-42303200	Enhancers	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links