Variant report

Variant	rs739343
Chromosome Location	chr9:118612180-118612181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10113886	0.90[AFR][1000 genomes]
rs10113904	0.88[AFR][1000 genomes]
rs10116122	0.88[AFR][1000 genomes]
rs10116160	0.90[AFR][1000 genomes]
rs10116601	0.88[AFR][1000 genomes]
rs10116987	0.89[AFR][1000 genomes]
rs10117171	0.84[AFR][1000 genomes]
rs10118806	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10118912	0.90[AFR][1000 genomes]
rs10119888	0.90[AFR][1000 genomes]
rs10120459	0.88[AFR][1000 genomes]
rs10120876	0.88[AFR][1000 genomes]
rs10121606	0.90[AFR][1000 genomes]
rs10121783	0.89[AFR][1000 genomes]
rs10123463	0.90[AFR][1000 genomes]
rs10125279	0.92[EUR][1000 genomes]
rs10982960	0.90[AFR][1000 genomes]
rs10982966	0.89[AFR][1000 genomes]
rs10982969	0.88[AFR][1000 genomes]
rs12341376	0.88[AFR][1000 genomes]
rs12341579	0.88[AFR][1000 genomes]
rs12552114	0.87[AFR][1000 genomes]
rs12552132	0.81[AFR][1000 genomes]
rs12554711	0.85[AFR][1000 genomes]
rs28396580	0.88[AFR][1000 genomes]
rs28411999	0.90[AFR][1000 genomes]
rs28581252	0.89[AFR][1000 genomes]
rs60501683	0.84[AFR][1000 genomes]
rs62577109	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62577115	0.90[AFR][1000 genomes]
rs62577116	0.90[AFR][1000 genomes]
rs7020520	0.88[AFR][1000 genomes]
rs7020729	0.83[AFR][1000 genomes]
rs7024386	0.88[AFR][1000 genomes]
rs7040535	0.88[AFR][1000 genomes]
rs7040682	0.88[AFR][1000 genomes]
rs766102	0.88[AFR][1000 genomes]
rs7856951	0.89[AFR][1000 genomes]
rs7857231	0.89[AFR][1000 genomes]
rs7861659	0.88[AFR][1000 genomes]
rs7866076	0.90[AFR][1000 genomes]
rs7866714	0.90[AFR][1000 genomes]
rs7874609	0.90[AFR][1000 genomes]
rs7875310	0.90[AFR][1000 genomes]
rs7875546	0.88[AFR][1000 genomes]
rs966955	0.85[AFR][1000 genomes]
rs9987648	0.90[AFR][1000 genomes]
rs9987812	0.90[AFR][1000 genomes]
rs9987941	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv831699	chr9:118457011-118641819	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118608400-118617600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:118608600-118612600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:118608600-118613400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:118608800-118612200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:118608800-118613200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:118609000-118612800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:118609800-118612800	Weak transcription	NHEK	skin
8	chr9:118610000-118612200	Weak transcription	HMEC	breast
9	chr9:118610000-118612400	Weak transcription	NHLF	lung
10	chr9:118610000-118613400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:118610200-118612200	Weak transcription	HSMM	muscle
12	chr9:118610200-118613200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:118610200-118613200	Weak transcription	NH-A	brain
14	chr9:118610200-118617600	Weak transcription	A549	lung
15	chr9:118610400-118612200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:118611000-118613200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:118611200-118613800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:118611200-118613800	Enhancers	NHDF-Ad	bronchial
19	chr9:118611400-118613800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:118611400-118617600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:118611800-118612200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:118612000-118613800	Enhancers	HSMMtube	muscle
23	chr9:118612000-118614000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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