The 2.0 version of rSNPBase

Variant report

Variant rs73934328
Chromosome Location chr2:54773626-54773627
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54744000-54777600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr2:54748400-54776800 Weak transcription Pancreas Pancrea
3 chr2:54752200-54777800 Weak transcription H9 Cell Line embryonic stem cell
4 chr2:54757000-54776800 Weak transcription Brain Germinal Matrix brain
5 chr2:54758200-54778200 Weak transcription Placenta Placenta
6 chr2:54762000-54775400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr2:54762200-54773800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr2:54763000-54776000 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr2:54764000-54776800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr2:54765600-54774000 Weak transcription Fetal Brain Female brain
11 chr2:54768200-54783800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr2:54768400-54775800 Weak transcription Placenta Amnion Placenta Amnion
13 chr2:54769800-54775400 Weak transcription Fetal Muscle Leg muscle
14 chr2:54769800-54775600 Weak transcription Fetal Stomach stomach
15 chr2:54769800-54777000 Weak transcription Psoas Muscle Psoas
16 chr2:54770000-54777400 Weak transcription GM12878-XiMat blood
17 chr2:54770400-54775000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr2:54770400-54775400 Weak transcription Lung lung
19 chr2:54770400-54776800 Weak transcription Fetal Muscle Trunk muscle
20 chr2:54770400-54782000 Weak transcription Rectal Smooth Muscle rectum
21 chr2:54770600-54773800 Weak transcription Colonic Mucosa Colon
22 chr2:54770600-54775400 Weak transcription Right Atrium heart
23 chr2:54770600-54776800 Weak transcription Stomach Smooth Muscle stomach
24 chr2:54770600-54780200 Enhancers Fetal Intestine Large intestine
25 chr2:54771600-54783400 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr2:54772400-54774600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr2:54772600-54773800 Flanking Active TSS HepG2 liver
28 chr2:54772600-54773800 Enhancers NHEK skin
29 chr2:54772600-54774000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:54772600-54774000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr2:54772600-54774000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
32 chr2:54772600-54774000 Enhancers Fetal Heart heart
33 chr2:54772600-54774000 Enhancers Stomach Mucosa stomach
34 chr2:54772600-54774000 Flanking Active TSS A549 lung
35 chr2:54772600-54774000 Enhancers HUVEC blood vessel
36 chr2:54772600-54774000 Enhancers Osteobl bone
37 chr2:54772600-54774200 Enhancers Brain Hippocampus Middle brain
38 chr2:54772600-54774200 Enhancers Fetal Adrenal Gland Adrenal Gland
39 chr2:54772600-54774200 Enhancers HMEC breast
40 chr2:54772600-54774200 Enhancers NHDF-Ad bronchial
41 chr2:54772600-54774600 Enhancers Brain Substantia Nigra brain
42 chr2:54772600-54778800 Enhancers Brain Anterior Caudate brain
43 chr2:54772600-54780200 Enhancers Fetal Intestine Small intestine
44 chr2:54772800-54773800 Enhancers Aorta Aorta
45 chr2:54772800-54773800 Enhancers Colon Smooth Muscle Colon
46 chr2:54772800-54773800 Enhancers Rectal Mucosa Donor 29 rectum
47 chr2:54772800-54773800 Enhancers Small Intestine intestine
48 chr2:54772800-54774000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr2:54772800-54774000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
50 chr2:54772800-54774000 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015