Variant report

Variant	rs73934497
Chromosome Location	chr2:54822581-54822582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54782515..54784267-chr2:54820223..54822640,2	MCF-7	breast:
2	chr2:54822318..54824059-chr2:54829758..54831616,2	MCF-7	breast:
3	chr2:54815707..54819448-chr2:54820160..54824681,7	K562	blood:
4	chr2:54815000..54820095-chr2:54820709..54825309,10	K562	blood:
5	chr2:54818034..54820422-chr2:54821780..54823433,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11892723	1.00[AMR][1000 genomes]
rs1963878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57368496	1.00[AMR][1000 genomes]
rs58722513	1.00[AMR][1000 genomes]
rs73932783	1.00[AMR][1000 genomes]
rs73934321	1.00[AMR][1000 genomes]
rs73934453	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925370	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998277	chr2:54710337-54849648	Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv961318	chr2:54818096-54823449	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54802200-54822600	Weak transcription	Esophagus	oesophagus
2	chr2:54805400-54830200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:54807000-54826000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:54808800-54822800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:54809600-54825800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:54814000-54822800	Weak transcription	Ovary	ovary
7	chr2:54815400-54823400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:54816200-54830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:54816600-54822600	Weak transcription	Colonic Mucosa	Colon
10	chr2:54816600-54828400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:54816800-54822600	Weak transcription	Placenta	Placenta
12	chr2:54816800-54823000	Weak transcription	Aorta	Aorta
13	chr2:54816800-54823200	Weak transcription	Fetal Kidney	kidney
14	chr2:54816800-54823400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:54817000-54822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:54817000-54822800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:54817000-54823200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:54817000-54823200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:54817000-54825800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:54817000-54826200	Weak transcription	NHDF-Ad	bronchial
21	chr2:54817400-54822600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:54817400-54823000	Weak transcription	Dnd41	blood
23	chr2:54817400-54823200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr2:54817400-54823400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr2:54817400-54825400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:54817600-54822600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:54817600-54822800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:54817600-54823600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:54817600-54825000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr2:54817600-54825600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:54817800-54822600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr2:54817800-54822800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr2:54817800-54823000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr2:54817800-54823000	Weak transcription	NH-A	brain
35	chr2:54817800-54823400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:54817800-54825800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr2:54817800-54826200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:54817800-54826200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:54818000-54824400	Weak transcription	HMEC	breast
40	chr2:54818000-54826200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:54818200-54822600	Weak transcription	Adipose Nuclei	Adipose
42	chr2:54818600-54822600	Weak transcription	Small Intestine	intestine
43	chr2:54818800-54822600	Weak transcription	Brain Hippocampus Middle	brain
44	chr2:54818800-54822800	Enhancers	Primary T cells from cord blood	blood
45	chr2:54818800-54823000	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr2:54818800-54823000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr2:54819200-54822600	Weak transcription	Spleen	Spleen
48	chr2:54819200-54822800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr2:54819200-54823200	Strong transcription	Fetal Intestine Small	intestine
50	chr2:54819600-54823000	Strong transcription	Fetal Stomach	stomach

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