Variant report

Variant	rs73934756
Chromosome Location	chr19:56687427-56687428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr19:56687362-56688032	PANC-1	pancreas:	n/a	n/a
2	CTCF	chr19:56687403-56687437	Lung_OC	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56687388-56687438	HEK293	kidney:	embryo
2	chr19:56687388-56687438	HCM	heart:	n/a
3	chr19:56687388-56687438	Hepatocyte	liver:	n/a
4	chr19:56687388-56687438	GM19239	blood:	n/a
5	chr19:56687388-56687438	SK-N-MC	brain:	n/a
6	chr19:56687388-56687438	GM12891	blood:	n/a
7	chr19:56687388-56687438	LNCaP	prostate:	n/a
8	chr19:56687388-56687438	HUVEC	blood vessel:	n/a
9	chr19:56687388-56687438	BJ	skin:	n/a
10	chr19:56687388-56687438	HIPEpiC	eye:	n/a
11	chr19:56687388-56687438	GM12878	blood:	n/a
12	chr19:56687388-56687438	SAEC	small airway:	n/a
13	chr19:56687388-56687438	PANC-1	pancreas:	n/a
14	chr19:56687388-56687438	HL-60	blood:	n/a
15	chr19:56687388-56687438	AG04449	skin:	fetal
16	chr19:56687388-56687438	NHBE	bronchial:	n/a
17	chr19:56687388-56687438	NT2-D1	testis:	n/a
18	chr19:56687388-56687438	MCF-7	breast:	n/a
19	chr19:56687388-56687438	Hela-S3	cervix:	n/a
20	chr19:56687388-56687438	AG04450	lung:	fetal
21	chr19:56687388-56687438	T-47D	breast:	n/a
22	chr19:56687388-56687438	GM12892	blood:	n/a
23	chr19:56687388-56687438	AG09319	gingival:	n/a
24	chr19:56687388-56687438	HCF	heart:	n/a
25	chr19:56687388-56687438	PrEC	prostate:	n/a
26	chr19:56687388-56687438	Caco-2	colon:	n/a
27	chr19:56687388-56687438	HRE	kidney:	n/a
28	chr19:56687388-56687438	HEEpiC	esophagus:	n/a
29	chr19:56687388-56687438	ECC-1	luminal epithelium:	n/a
30	chr19:56687388-56687438	K562	blood:	n/a
31	chr19:56687388-56687438	U87	brain:	n/a
32	chr19:56687388-56687438	AoSMC	blood vessel:	n/a
33	chr19:56687388-56687438	ovcar-3	ovarian:	n/a
34	chr19:56687388-56687438	H1-hESC	embryonic stem cell:	embryo
35	chr19:56687388-56687438	SKMC	muscle:	n/a
36	chr19:56687388-56687438	HMEC	breast:	n/a
37	chr19:56687388-56687438	AG10803	skin:	n/a
38	chr19:56687388-56687438	HNPCEpiC	eye:	n/a
39	chr19:56687388-56687438	MCF10A-Er-Src	breast:	n/a
40	chr19:56687388-56687438	ProgFib	skin:	n/a
41	chr19:56687388-56687438	PFSK-1	brain:	n/a
42	chr19:56687388-56687438	GM06990	blood:	n/a
43	chr19:56687388-56687438	BE2_C	brain:	n/a
44	chr19:56687388-56687438	AG09309	skin:	n/a
45	chr19:56687388-56687438	CMK	blood:	n/a
46	chr19:56687388-56687438	HPAEpiC	pulmonary alveolar:	n/a
47	chr19:56687388-56687438	HCPEpiC	choroid plexus:	n/a
48	chr19:56687388-56687438	RPTEC	kidney:	n/a
49	chr19:56687388-56687438	NB4	blood:	n/a
50	chr19:56687388-56687438	HepG2	liver:	n/a

No data

Variant related genes	Relation type
GALP	TF binding region
GALP	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056598	chr19:56331762-56703428	Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
2	nsv1064371	chr19:56418215-56842450	ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1057316	chr19:56418215-56849458	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv580354	chr19:56505685-56723492	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv523651	chr19:56537528-56707048	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1057820	chr19:56555942-56720262	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv528998	chr19:56578238-56707048	Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
9	nsv528361	chr19:56638845-56688570	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv3319234	chr19:56686205-56689036	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3319235	chr19:56686205-56689036	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv20520	chr19:56686719-56688658	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56673000-56690000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr19:56685600-56687600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:56685600-56688600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:56685800-56688000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:56686600-56688200	Enhancers	Liver	Liver
6	chr19:56686600-56688400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:56686800-56688000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:56687400-56687600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:56687400-56687600	Flanking Active TSS	Brain Germinal Matrix	brain

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