The 2.0 version of rSNPBase

Variant report

Variant rs73934994
Chromosome Location chr19:52641781-52641782
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52629600-52641800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr19:52634000-52642000 Weak transcription Small Intestine intestine
3 chr19:52634800-52642000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr19:52636000-52641800 Weak transcription Ovary ovary
5 chr19:52637400-52641800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr19:52637600-52641800 Weak transcription Primary B cells from peripheral blood blood
7 chr19:52639000-52641800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr19:52639000-52642000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr19:52640000-52642000 Enhancers Primary Natural Killer cells fromperipheralblood blood
10 chr19:52640200-52642000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr19:52641000-52641800 Enhancers Primary T helper cells PMA-I stimulated --
12 chr19:52641000-52643600 Active TSS HUES64 Cell Line embryonic stem cell
13 chr19:52641200-52641800 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
14 chr19:52641200-52641800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr19:52641200-52641800 Enhancers Primary T helper naive cells fromperipheralblood blood
16 chr19:52641200-52641800 Enhancers Primary T killer memory cells from peripheral blood blood
17 chr19:52641200-52641800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
18 chr19:52641200-52641800 Enhancers Brain Angular Gyrus brain
19 chr19:52641200-52641800 Enhancers Brain Cingulate Gyrus brain
20 chr19:52641200-52641800 Enhancers Brain Hippocampus Middle brain
21 chr19:52641200-52641800 Enhancers Gastric stomach
22 chr19:52641200-52641800 Enhancers Pancreas Pancrea
23 chr19:52641200-52641800 Enhancers Placenta Amnion Placenta Amnion
24 chr19:52641200-52641800 Flanking Active TSS Rectal Smooth Muscle rectum
25 chr19:52641200-52641800 Enhancers Skeletal Muscle Female skeletal muscle
26 chr19:52641200-52641800 Enhancers Thymus Thymus
27 chr19:52641200-52641800 Active TSS GM12878-XiMat blood
28 chr19:52641200-52641800 Flanking Active TSS Hela-S3 cervix
29 chr19:52641200-52642000 Enhancers Primary T cells fromperipheralblood blood
30 chr19:52641200-52642000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr19:52641200-52642000 Enhancers Primary T helper cells fromperipheralblood blood
32 chr19:52641200-52642000 Enhancers Lung lung
33 chr19:52641200-52642000 Flanking Active TSS K562 blood
34 chr19:52641200-52642000 Flanking Active TSS NHEK skin
35 chr19:52641200-52642000 Flanking Active TSS Osteobl bone
36 chr19:52641200-52642200 Enhancers Primary neutrophils fromperipheralblood blood
37 chr19:52641200-52642200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr19:52641200-52642200 Flanking Active TSS Dnd41 blood
39 chr19:52641200-52642400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr19:52641200-52642600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr19:52641200-52643200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr19:52641200-52643200 Active TSS ES-UCSF4 Cell Line embryonic stem cell
43 chr19:52641200-52643600 Active TSS H1 Cell Line embryonic stem cell
44 chr19:52641200-52643600 Active TSS iPS-20b Cell Line embryonic stem cell
45 chr19:52641200-52643600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
46 chr19:52641200-52643600 Active TSS Aorta Aorta
47 chr19:52641200-52643800 Active TSS NH-A brain
48 chr19:52641200-52644000 Active TSS Muscle Satellite Cultured Cells --
49 chr19:52641400-52641800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr19:52641400-52641800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015