Variant report

Variant	rs73935990
Chromosome Location	chr2:67071452-67071453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17032640	0.85[AFR][1000 genomes]
rs59394315	0.85[AFR][1000 genomes]
rs73935986	0.89[AFR][1000 genomes]
rs73935987	0.85[AFR][1000 genomes]
rs73935991	0.89[AFR][1000 genomes]
rs73935994	0.85[AFR][1000 genomes]
rs73935995	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67061400-67072800	Weak transcription	Pancreas	Pancrea
2	chr2:67067800-67072400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:67067800-67072400	Weak transcription	Aorta	Aorta
4	chr2:67068400-67072200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:67068400-67072400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:67068400-67072400	Weak transcription	NHLF	lung
7	chr2:67068400-67073600	Weak transcription	Fetal Kidney	kidney
8	chr2:67068400-67080200	Weak transcription	Ovary	ovary
9	chr2:67068600-67072200	Weak transcription	NHDF-Ad	bronchial
10	chr2:67068600-67072600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:67068600-67072600	Weak transcription	HSMM	muscle
12	chr2:67068600-67077800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:67068800-67072400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:67069400-67072200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:67070200-67073000	Enhancers	Fetal Lung	lung
17	chr2:67070600-67071800	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:67070800-67071800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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