Variant report

Variant	rs73936576
Chromosome Location	chr2:67923162-67923163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17034161	0.82[AFR][1000 genomes]
rs17034217	0.82[AFR][1000 genomes]
rs17034221	0.82[AFR][1000 genomes]
rs17034243	0.82[AFR][1000 genomes]
rs17034247	0.82[AFR][1000 genomes]
rs17034253	0.82[AFR][1000 genomes]
rs55935824	0.87[AFR][1000 genomes]
rs56161313	0.82[AFR][1000 genomes]
rs58408781	0.82[AFR][1000 genomes]
rs61402034	0.82[AFR][1000 genomes]
rs73936580	0.82[AFR][1000 genomes]
rs73936584	0.82[AFR][1000 genomes]
rs73936592	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67921200-67923400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:67922200-67923200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:67922200-67927800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:67922400-67923400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:67922400-67923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:67922800-67923200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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