Variant report

Variant	rs73936815
Chromosome Location	chr19:45087619-45087620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61418520	0.86[EUR][1000 genomes]
rs7257998	1.00[EUR][1000 genomes]
rs7258796	1.00[EUR][1000 genomes]
rs73936819	0.86[EUR][1000 genomes]
rs8106157	0.86[EUR][1000 genomes]
rs8106257	0.86[EUR][1000 genomes]
rs8106589	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062812	chr19:45042262-45214796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv960931	chr19:45073821-45102725	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv961160	chr19:45087090-45092462	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45080800-45088800	Weak transcription	A549	lung
2	chr19:45084800-45093400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr19:45085000-45088800	Weak transcription	K562	blood
4	chr19:45086400-45088400	Weak transcription	HepG2	liver
5	chr19:45086400-45091200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr19:45087000-45091000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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