Variant report

Variant	rs73939327
Chromosome Location	chr18:7658981-7658982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73939304	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064597	chr18:7169490-7762738	Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv543636	chr18:7169490-7762738	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1063350	chr18:7215275-7659999	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7631000-7662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr18:7646600-7663200	Weak transcription	Pancreas	Pancrea
3	chr18:7649400-7663000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr18:7656200-7659600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr18:7656400-7662000	Enhancers	Psoas Muscle	Psoas
6	chr18:7656800-7659600	Enhancers	HepG2	liver
7	chr18:7656800-7659800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:7657000-7668400	Weak transcription	Gastric	stomach
9	chr18:7657200-7659000	Enhancers	Aorta	Aorta
10	chr18:7657200-7660400	Enhancers	Placenta	Placenta
11	chr18:7657400-7659000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:7657400-7663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:7657400-7663000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr18:7657400-7664000	Weak transcription	Lung	lung
15	chr18:7657400-7680600	Weak transcription	Ovary	ovary
16	chr18:7657600-7663000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:7657800-7660000	Weak transcription	Left Ventricle	heart
18	chr18:7657800-7664200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr18:7657800-7668400	Weak transcription	Spleen	Spleen
20	chr18:7657800-7669200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr18:7658000-7659400	Enhancers	Fetal Heart	heart
22	chr18:7658000-7669200	Weak transcription	Fetal Stomach	stomach
23	chr18:7658200-7659200	Weak transcription	Right Ventricle	heart
24	chr18:7658200-7659800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr18:7658200-7661000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr18:7658200-7663000	Weak transcription	Fetal Lung	lung
27	chr18:7658400-7659000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr18:7658400-7659600	Enhancers	Right Atrium	heart
29	chr18:7658600-7659000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr18:7658800-7659000	Enhancers	A549	lung
31	chr18:7658800-7661000	Weak transcription	Adipose Nuclei	Adipose
32	chr18:7658800-7661200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr18:7658800-7661400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr18:7658800-7663000	Weak transcription	Brain Anterior Caudate	brain

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