Variant report

Variant	rs73939851
Chromosome Location	chr18:9427029-9427030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9405763..9408189-chr18:9426864..9428674,2	K562	blood:
2	chr18:9426276..9429923-chr18:9473162..9476203,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273335	Chromatin interaction
ENSG00000017797	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11081476	1.00[AMR][1000 genomes]
rs1507610	1.00[AMR][1000 genomes]
rs1507611	1.00[AMR][1000 genomes]
rs1605475	1.00[AMR][1000 genomes]
rs2864492	1.00[AMR][1000 genomes]
rs2864496	1.00[AMR][1000 genomes]
rs4239338	1.00[AMR][1000 genomes]
rs4239339	1.00[AMR][1000 genomes]
rs56215503	1.00[AMR][1000 genomes]
rs60060452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6506657	1.00[AMR][1000 genomes]
rs6506658	1.00[AMR][1000 genomes]
rs6506662	1.00[AMR][1000 genomes]
rs7236178	1.00[AMR][1000 genomes]
rs7359718	1.00[AMR][1000 genomes]
rs73939838	1.00[AMR][1000 genomes]
rs73939839	1.00[AMR][1000 genomes]
rs73939850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73939854	0.93[AFR][1000 genomes]
rs8085686	1.00[AMR][1000 genomes]
rs8090712	1.00[AMR][1000 genomes]
rs8098555	1.00[AMR][1000 genomes]
rs9963504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv428005	chr18:9401658-9542396	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9417200-9428400	Weak transcription	Gastric	stomach
2	chr18:9417600-9429200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr18:9418200-9428400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr18:9419600-9427200	Weak transcription	Fetal Kidney	kidney
5	chr18:9421400-9428200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr18:9424000-9427400	Weak transcription	Stomach Mucosa	stomach
7	chr18:9425200-9428200	Weak transcription	Right Atrium	heart
8	chr18:9425600-9428400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr18:9426400-9430200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr18:9426800-9427600	Enhancers	Primary hematopoietic stem cells	blood
11	chr18:9426800-9427600	Enhancers	Spleen	Spleen
12	chr18:9426800-9430000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links