Variant report

Variant	rs73939856
Chromosome Location	chr18:9436745-9436746
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73939854	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv428005	chr18:9401658-9542396	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9433200-9438000	Enhancers	Fetal Muscle Trunk	muscle
2	chr18:9433800-9437000	Weak transcription	HSMMtube	muscle
3	chr18:9434400-9437000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:9434600-9437000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr18:9434800-9437800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr18:9435400-9437000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:9435400-9437800	Enhancers	Fetal Lung	lung
8	chr18:9436000-9437200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:9436200-9436800	Enhancers	GM12878-XiMat	blood
10	chr18:9436200-9437400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:9436200-9437800	Enhancers	Ovary	ovary
12	chr18:9436200-9438200	Enhancers	Fetal Muscle Leg	muscle
13	chr18:9436200-9438600	Enhancers	Fetal Stomach	stomach
14	chr18:9436400-9436800	Weak transcription	Fetal Thymus	thymus
15	chr18:9436400-9437200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:9436400-9437200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr18:9436400-9437200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr18:9436400-9437400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr18:9436400-9437400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:9436400-9437600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr18:9436400-9437600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr18:9436400-9437600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr18:9436400-9437600	Enhancers	Fetal Kidney	kidney
24	chr18:9436400-9437800	Enhancers	Primary hematopoietic stem cells	blood
25	chr18:9436400-9437800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr18:9436400-9437800	Enhancers	NHDF-Ad	bronchial
27	chr18:9436600-9437000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr18:9436600-9437200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr18:9436600-9437600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links