Variant report

Variant	rs73940034
Chromosome Location	chr18:9801856-9801857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9704929..9711093-chr18:9801644..9805263,5	K562	blood:
2	chr18:9795590..9800320-chr18:9801638..9804306,8	K562	blood:
3	chr18:9786425..9791088-chr18:9800234..9803479,5	K562	blood:
4	chr18:9665615..9667680-chr18:9799488..9802402,2	K562	blood:
5	chr18:9801730..9804274-chr18:9913788..9916136,2	K562	blood:
6	chr18:9613002..9616805-chr18:9800693..9804601,3	K562	blood:
7	chr18:9708264..9710845-chr18:9800702..9803608,2	MCF-7	breast:
8	chr18:9801306..9803613-chr18:9951073..9953026,2	K562	blood:
9	chr18:9800652..9805908-chr18:9908377..9915779,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000263627	Chromatin interaction
ENSG00000154845	Chromatin interaction
ENSG00000272799	Chromatin interaction
ENSG00000101558	Chromatin interaction
ENSG00000168461	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12454158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12455453	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267561	0.83[EUR][1000 genomes]
rs2267565	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2267566	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2267568	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867813	0.82[ASN][1000 genomes]
rs73940033	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8091631	0.81[ASN][1000 genomes]
rs8092013	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv909366	chr18:9760942-9827368	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv833586	chr18:9783830-9971693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9771800-9803800	Weak transcription	Fetal Stomach	stomach
2	chr18:9771800-9807800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr18:9773600-9807000	Weak transcription	Lung	lung
4	chr18:9775600-9806400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr18:9780200-9807000	Weak transcription	Pancreas	Pancrea
6	chr18:9782400-9802600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr18:9782400-9802600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr18:9782400-9803400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr18:9783200-9802600	Weak transcription	NHLF	lung
10	chr18:9783200-9804000	Weak transcription	NHEK	skin
11	chr18:9783400-9802600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:9783400-9808600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr18:9785800-9802400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr18:9788000-9802800	Weak transcription	NH-A	brain
15	chr18:9791600-9802600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:9792600-9802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:9792800-9802400	Weak transcription	Aorta	Aorta
18	chr18:9792800-9807000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr18:9793200-9802400	Weak transcription	Placenta	Placenta
20	chr18:9793200-9803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr18:9794000-9802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:9794200-9802400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr18:9794200-9803600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:9794600-9802200	Weak transcription	Osteobl	bone
25	chr18:9795800-9802400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:9797600-9802400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr18:9797600-9802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr18:9797600-9802600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:9797600-9802600	Weak transcription	HSMMtube	muscle
30	chr18:9797600-9802800	Weak transcription	HSMM	muscle
31	chr18:9797600-9803000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr18:9798200-9804200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr18:9798400-9802400	Weak transcription	Left Ventricle	heart
34	chr18:9798400-9802400	Weak transcription	NHDF-Ad	bronchial
35	chr18:9798400-9802600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr18:9798400-9802600	Weak transcription	Adipose Nuclei	Adipose
37	chr18:9798400-9802600	Weak transcription	Brain Anterior Caudate	brain
38	chr18:9798400-9803400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr18:9798400-9803600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr18:9798400-9803800	Weak transcription	Fetal Lung	lung
41	chr18:9798600-9802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr18:9798600-9802200	Weak transcription	Fetal Heart	heart
43	chr18:9798800-9802000	Weak transcription	Brain Substantia Nigra	brain
44	chr18:9798800-9803600	Weak transcription	Brain Germinal Matrix	brain
45	chr18:9799000-9802200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr18:9799000-9802600	Weak transcription	Fetal Muscle Leg	muscle
47	chr18:9799200-9802400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr18:9799200-9802400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr18:9799200-9802400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr18:9799400-9802200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links