Variant report

Variant	rs73940528
Chromosome Location	chr2:76737307-76737308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12104661	1.00[EUR][1000 genomes]
rs58465901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58472967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73938123	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73938131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73938133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73938136	1.00[EUR][1000 genomes]
rs73938138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940529	1.00[EUR][1000 genomes]
rs73940531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76734200-76739600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76736800-76737800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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