Variant report

Variant	rs73940745
Chromosome Location	chr2:56879441-56879442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1015973	1.00[AMR][1000 genomes]
rs10490406	0.85[AMR][1000 genomes]
rs17048045	0.92[AMR][1000 genomes]
rs17048048	0.92[AMR][1000 genomes]
rs17048053	0.92[AMR][1000 genomes]
rs17048070	0.92[AMR][1000 genomes]
rs17048080	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17048081	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17048318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17048321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17048331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2058994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2161033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4521083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58798155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940703	0.92[AMR][1000 genomes]
rs73940706	0.92[AMR][1000 genomes]
rs73940709	0.92[AMR][1000 genomes]
rs73940710	0.92[AMR][1000 genomes]
rs73940760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7419551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582051	chr2:56706758-56902709	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005547	chr2:56751574-56887287	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1012596	chr2:56761303-56916336	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv535725	chr2:56761303-56916336	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1009860	chr2:56768276-56896971	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv874179	chr2:56817927-56957466	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv874180	chr2:56822558-56957466	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56879000-56879800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:56879200-56879600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr2:56879400-56879600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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