Variant report
| Variant | rs73942277 |
|---|---|
| Chromosome Location | chr2:58240564-58240565 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FANCL-1 | chr2:58236367-58240741 | ENSG00000250445 |
| 2 | lnc-FANCL-1 | chr2:58236367-58240741 | NONHSAT070845 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000028116 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1518402 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56878245 | 1.00[AFR][1000 genomes] |
| rs59983111 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60712586 | 1.00[AFR][1000 genomes] |
| rs61415878 | 0.89[AFR][1000 genomes] |
| rs73942251 | 0.95[AFR][1000 genomes] |
| rs73942258 | 0.97[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834159 | chr2:58101262-58283655 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv525988 | chr2:58161520-58427786 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 3 | nsv874200 | chr2:58163178-58262016 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv999591 | chr2:58214871-58316147 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
