Variant report

Variant	rs73942928
Chromosome Location	chr2:55940633-55940634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10496046	0.84[EUR][1000 genomes]
rs17278113	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17278127	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17369212	0.94[ASN][1000 genomes]
rs17744287	0.92[EUR][1000 genomes]
rs17744399	0.89[EUR][1000 genomes]
rs3748950	0.84[EUR][1000 genomes]
rs4672063	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56098806	0.81[EUR][1000 genomes]
rs6743922	0.92[EUR][1000 genomes]
rs73942925	0.97[EUR][1000 genomes]
rs73942929	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757798	chr2:55747239-55981074	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2759050	chr2:55747239-55981074	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1008452	chr2:55809191-55987274	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv2762645	chr2:55892248-55963418	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2760573	chr2:55903016-55941440	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55939400-55940800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:55939400-55943600	Enhancers	Fetal Intestine Small	intestine
3	chr2:55939400-55943800	Enhancers	Fetal Intestine Large	intestine
4	chr2:55939600-55940800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:55939600-55943200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:55940000-55941200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr2:55940000-55941800	Weak transcription	HepG2	liver
8	chr2:55940000-55945600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:55940200-55945600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:55940200-55945600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:55940200-55945600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:55940200-55945600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:55940200-55945800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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