Variant report

Variant	rs73943195
Chromosome Location	chr2:72761055-72761056
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73943192	0.83[AFR][1000 genomes]
rs73943201	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv582208	chr2:72690622-72835886	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72759600-72765600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:72759800-72761200	Weak transcription	HSMMtube	muscle
3	chr2:72760000-72761600	Enhancers	Brain Hippocampus Middle	brain
4	chr2:72760200-72761200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:72760200-72761400	Enhancers	Hela-S3	cervix
6	chr2:72760200-72762600	Enhancers	A549	lung
7	chr2:72760400-72761200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:72760400-72761200	Enhancers	Osteobl	bone
9	chr2:72760400-72761400	Enhancers	NHEK	skin
10	chr2:72760400-72769800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:72760600-72761400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:72760600-72761400	Enhancers	NH-A	brain
13	chr2:72760600-72761600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:72760600-72762000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:72760600-72762400	Enhancers	HUVEC	blood vessel
16	chr2:72760800-72761200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:72760800-72761400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:72760800-72761800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:72760800-72765200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:72760800-72765600	Weak transcription	HSMM	muscle
21	chr2:72760800-72766000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:72760800-72766000	Weak transcription	Brain Angular Gyrus	brain
23	chr2:72760800-72766000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr2:72761000-72761400	Flanking Active TSS	K562	blood
25	chr2:72761000-72762600	Enhancers	HUES48 Cell Line	embryonic stem cell

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