Variant report
Variant | rs73943556 |
---|---|
Chromosome Location | chr2:57835367-57835368 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:57835362..57837031-chr2:57842743..57844296,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10153799 | 0.93[ASN][1000 genomes] |
rs10166539 | 0.93[ASN][1000 genomes] |
rs10204865 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10496069 | 0.90[ASN][1000 genomes] |
rs10496071 | 0.92[AMR][1000 genomes] |
rs12619992 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12621120 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13407632 | 0.93[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs13410921 | 0.93[ASN][1000 genomes] |
rs13417337 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13428489 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17048981 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17049010 | 0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4144515 | 0.98[ASN][1000 genomes] |
rs57817138 | 0.93[ASN][1000 genomes] |
rs59040918 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs60687487 | 0.92[AMR][1000 genomes] |
rs6746753 | 0.93[ASN][1000 genomes] |
rs73941609 | 0.92[AMR][1000 genomes] |
rs73941623 | 0.84[AMR][1000 genomes] |
rs73941626 | 0.85[AMR][1000 genomes] |
rs73943554 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9309298 | 0.93[ASN][1000 genomes] |
rs9309299 | 0.93[ASN][1000 genomes] |
rs9309301 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999898 | chr2:57193127-57901238 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv535729 | chr2:57193127-57901238 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1007118 | chr2:57562051-58147588 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv834137 | chr2:57683649-57913898 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv874193 | chr2:57758608-58066673 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv874194 | chr2:57793672-57896756 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | nsv874195 | chr2:57808671-57855341 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv1006688 | chr2:57822953-58030203 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:57828000-57842200 | Weak transcription | Thymus | Thymus |