Variant report

Variant	rs73944242
Chromosome Location	chr18:11712474-11712475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73944237	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv978602	chr18:11699589-11729341	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11690400-11713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:11696200-11713600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:11697400-11727000	Weak transcription	Esophagus	oesophagus
4	chr18:11698000-11715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:11711600-11714200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:11711800-11714000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:11712000-11714000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr18:11712000-11714400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:11712200-11712600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr18:11712200-11714200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr18:11712400-11713400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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