Variant report

Variant	rs73945291
Chromosome Location	chr2:86640877-86640878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86639068..86641413-chr2:86649542..86651582,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13404334	1.00[EUR][1000 genomes]
rs1863053	1.00[EUR][1000 genomes]
rs2113613	1.00[EUR][1000 genomes]
rs28687428	1.00[EUR][1000 genomes]
rs6547667	1.00[EUR][1000 genomes]
rs6704826	1.00[EUR][1000 genomes]
rs72926420	1.00[EUR][1000 genomes]
rs72940103	1.00[EUR][1000 genomes]
rs73945292	1.00[EUR][1000 genomes]
rs73946347	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86640600-86641000	Enhancers	Primary hematopoietic stem cells	blood
2	chr2:86640600-86641000	Enhancers	Fetal Muscle Leg	muscle
3	chr2:86640600-86641200	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:86640600-86641400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:86640600-86641400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr2:86640800-86641000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:86640800-86641000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:86640800-86641000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:86640800-86641000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:86640800-86641000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:86640800-86641000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
12	chr2:86640800-86641000	Bivalent Enhancer	Fetal Kidney	kidney
13	chr2:86640800-86641000	Active TSS	Fetal Muscle Trunk	muscle
14	chr2:86640800-86641000	Enhancers	Left Ventricle	heart
15	chr2:86640800-86641000	Flanking Bivalent TSS/Enh	Sigmoid Colon	Sigmoid Colon
16	chr2:86640800-86641000	Flanking Active TSS	HSMMtube	muscle
17	chr2:86640800-86641200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:86640800-86641200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr2:86640800-86641200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr2:86640800-86641200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:86640800-86641200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:86640800-86641200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:86640800-86641200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:86640800-86641200	Active TSS	Brain Anterior Caudate	brain
25	chr2:86640800-86641200	Active TSS	Brain Hippocampus Middle	brain
26	chr2:86640800-86641200	Active TSS	Colon Smooth Muscle	Colon
27	chr2:86640800-86641200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr2:86640800-86641200	Enhancers	Placenta	Placenta
29	chr2:86640800-86641200	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr2:86640800-86641400	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr2:86640800-86641600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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