Variant report

Variant	rs73945748
Chromosome Location	chr18:11096250-11096251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58092154	1.00[AMR][1000 genomes]
rs60194051	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11085600-11096800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr18:11090800-11096600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:11093400-11096400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr18:11094400-11097800	Enhancers	Fetal Lung	lung
5	chr18:11094800-11096600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr18:11094800-11097000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr18:11095000-11096800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr18:11095000-11097800	Enhancers	Brain Cingulate Gyrus	brain
9	chr18:11095400-11097000	Enhancers	Aorta	Aorta
10	chr18:11095400-11097000	Enhancers	HUVEC	blood vessel
11	chr18:11095400-11097800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr18:11095600-11097200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:11095800-11096800	Weak transcription	Brain Substantia Nigra	brain
14	chr18:11095800-11097600	Enhancers	Colon Smooth Muscle	Colon
15	chr18:11096000-11096400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:11096000-11096400	Enhancers	Lung	lung
17	chr18:11096000-11096400	Enhancers	Spleen	Spleen
18	chr18:11096000-11096600	Enhancers	Fetal Muscle Trunk	muscle
19	chr18:11096000-11097000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr18:11096000-11097000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr18:11096000-11097000	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr18:11096000-11097000	Enhancers	Fetal Stomach	stomach
23	chr18:11096000-11097000	Enhancers	Right Atrium	heart
24	chr18:11096000-11097200	Enhancers	Hela-S3	cervix
25	chr18:11096000-11097400	Flanking Active TSS	GM12878-XiMat	blood
26	chr18:11096000-11097600	Enhancers	Fetal Muscle Leg	muscle
27	chr18:11096000-11097600	Enhancers	Psoas Muscle	Psoas
28	chr18:11096200-11096400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr18:11096200-11096400	Enhancers	Duodenum Mucosa	Duodenum
30	chr18:11096200-11096800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:11096200-11096800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr18:11096200-11097000	Enhancers	Brain Angular Gyrus	brain
33	chr18:11096200-11097000	Enhancers	Left Ventricle	heart
34	chr18:11096200-11097000	Enhancers	NH-A	brain
35	chr18:11096200-11097000	Enhancers	NHDF-Ad	bronchial
36	chr18:11096200-11097600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr18:11096200-11097600	Enhancers	Brain Hippocampus Middle	brain

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