Variant report

Variant	rs739506
Chromosome Location	chr7:104054245-104054246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10243493	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1557693	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17137518	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36109662	0.81[ASN][1000 genomes]
rs739507	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104053000-104055600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:104053400-104054600	Weak transcription	Brain Germinal Matrix	brain
3	chr7:104053600-104054800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:104053600-104055000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:104053800-104055000	Weak transcription	Brain Angular Gyrus	brain
6	chr7:104054000-104055400	Enhancers	Brain Hippocampus Middle	brain
7	chr7:104054200-104054600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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