Variant report

Variant	rs73953224
Chromosome Location	chr18:13374911-13374912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13373046..13375537-chr18:13392405..13395304,3	MCF-7	breast:
2	chr18:13214539..13218165-chr18:13373231..13377099,4	MCF-7	breast:
3	chr18:13370761..13372508-chr18:13373066..13375363,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267239	Chromatin interaction
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12456449	1.00[EUR][1000 genomes]
rs12458788	1.00[EUR][1000 genomes]
rs12458792	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
2	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
3	chr18:13365800-13376400	Weak transcription	Liver	Liver
4	chr18:13370000-13375000	Weak transcription	Fetal Heart	heart
5	chr18:13370000-13382200	Enhancers	Fetal Brain Male	brain
6	chr18:13370400-13375000	Weak transcription	Fetal Stomach	stomach
7	chr18:13370600-13375000	Weak transcription	Stomach Mucosa	stomach
8	chr18:13371200-13375200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr18:13371200-13376200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr18:13371400-13375800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:13372200-13376800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr18:13372400-13375000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr18:13372400-13375600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr18:13372400-13377000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr18:13372400-13377000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr18:13372600-13376400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr18:13372600-13379600	Weak transcription	Colonic Mucosa	Colon
18	chr18:13372800-13375000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr18:13372800-13375000	Weak transcription	Small Intestine	intestine
20	chr18:13372800-13377200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr18:13373000-13375200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr18:13373000-13376400	Weak transcription	Primary B cells from cord blood	blood
23	chr18:13373000-13376600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr18:13373000-13388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr18:13373800-13375000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr18:13374000-13376600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr18:13374000-13377400	Enhancers	Brain Substantia Nigra	brain
28	chr18:13374200-13375000	Genic enhancers	Fetal Thymus	thymus
29	chr18:13374200-13375200	Enhancers	Brain Cingulate Gyrus	brain
30	chr18:13374200-13375200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr18:13374200-13375800	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr18:13374200-13376000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr18:13374200-13376200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr18:13374200-13376200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr18:13374200-13376800	Genic enhancers	Thymus	Thymus
36	chr18:13374200-13377200	Enhancers	Brain Angular Gyrus	brain
37	chr18:13374200-13377400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr18:13374200-13377800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr18:13374200-13378600	Enhancers	Right Ventricle	heart
40	chr18:13374200-13381600	Enhancers	Brain Anterior Caudate	brain
41	chr18:13374400-13375600	Flanking Active TSS	Fetal Brain Female	brain
42	chr18:13374400-13376200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr18:13374400-13376200	Enhancers	Lung	lung
44	chr18:13374400-13376200	Enhancers	HUVEC	blood vessel
45	chr18:13374400-13376400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr18:13374400-13380800	Enhancers	Fetal Muscle Trunk	muscle
47	chr18:13374400-13383800	Enhancers	Left Ventricle	heart
48	chr18:13374600-13375000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr18:13374600-13375000	Enhancers	Brain Hippocampus Middle	brain
50	chr18:13374600-13375000	Enhancers	NH-A	brain

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