Variant report

Variant	rs73953278
Chromosome Location	chr2:127944713-127944714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs35075135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55897983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55912480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56096327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56911251	1.00[AMR][1000 genomes]
rs73953271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953284	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953287	1.00[AMR][1000 genomes]
rs73953288	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953289	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953290	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953291	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953292	1.00[AMR][1000 genomes]
rs73953302	1.00[AMR][1000 genomes]
rs73956513	1.00[AMR][1000 genomes]
rs73956524	1.00[AMR][1000 genomes]
rs73956527	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999422	chr2:127464647-127956543	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1006112	chr2:127830117-128032546	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2757832	chr2:127830943-128006514	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2759090	chr2:127830943-128006514	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1011378	chr2:127841930-128020546	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv999809	chr2:127841930-128032546	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1010669	chr2:127848860-128032546	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1003599	chr2:127871183-128059407	Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv535920	chr2:127871183-128059407	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127934400-127946600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:127934600-127955000	Weak transcription	NHEK	skin
3	chr2:127934600-127965600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:127939800-127945400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:127940400-127947200	Strong transcription	Fetal Stomach	stomach
6	chr2:127940600-127944800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:127941000-127963000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:127941200-127944800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:127941200-127944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:127941400-127945000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:127941600-127945000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:127943000-127959400	Weak transcription	Gastric	stomach
13	chr2:127944000-127952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:127944200-127945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:127944200-127945600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr2:127944200-127947400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:127944200-127950400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:127944200-127951800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:127944400-127945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:127944400-127945200	Strong transcription	Fetal Lung	lung
21	chr2:127944400-127945400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr2:127944400-127945400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr2:127944400-127945400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr2:127944400-127945800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr2:127944400-127946000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:127944400-127947600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:127944600-127944800	Enhancers	Primary hematopoietic stem cells	blood
28	chr2:127944600-127945400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr2:127944600-127945800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr2:127944600-127947800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links