Variant report

Variant	rs73953824
Chromosome Location	chr18:43925062-43925063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43912035..43913739-chr18:43924023..43926965,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60571036	0.83[AMR][1000 genomes]
rs73953823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819321	chr18:43909994-43930972	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1822108	chr18:43909994-43930972	Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv576811	chr18:43913732-43930972	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43916200-43929000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr18:43918400-43935800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr18:43919000-43935600	Weak transcription	Fetal Heart	heart
4	chr18:43919800-43926800	Enhancers	Spleen	Spleen
5	chr18:43920800-43925400	Enhancers	Lung	lung
6	chr18:43921000-43925200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:43921400-43925200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr18:43921800-43925800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr18:43922200-43925200	Enhancers	Left Ventricle	heart
10	chr18:43923000-43925600	Strong transcription	Brain Germinal Matrix	brain
11	chr18:43923000-43926600	Enhancers	Fetal Muscle Trunk	muscle
12	chr18:43923000-43928000	Genic enhancers	Fetal Brain Female	brain
13	chr18:43923200-43925600	Enhancers	Adipose Nuclei	Adipose
14	chr18:43923200-43925600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr18:43923200-43927200	Enhancers	Fetal Thymus	thymus
16	chr18:43923400-43925400	Enhancers	Right Ventricle	heart
17	chr18:43923400-43925600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr18:43923400-43925600	Enhancers	Primary hematopoietic stem cells	blood
19	chr18:43923400-43925600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr18:43923400-43925800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr18:43923400-43926200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr18:43923400-43927000	Enhancers	Primary B cells from cord blood	blood
23	chr18:43923400-43927000	Enhancers	Primary B cells from peripheral blood	blood
24	chr18:43923600-43925200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr18:43923600-43925400	Enhancers	H9 Cell Line	embryonic stem cell
26	chr18:43923600-43925400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr18:43923600-43926000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr18:43923600-43926400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr18:43923600-43926400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr18:43923800-43925200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr18:43923800-43925200	Enhancers	Primary T cells from cord blood	blood
32	chr18:43923800-43925400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr18:43923800-43926000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr18:43923800-43926000	Enhancers	Fetal Muscle Leg	muscle
35	chr18:43923800-43926200	Enhancers	Fetal Brain Male	brain
36	chr18:43923800-43926800	Enhancers	Thymus	Thymus
37	chr18:43923800-43929800	Weak transcription	Hela-S3	cervix
38	chr18:43924000-43925200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr18:43924000-43925400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr18:43924000-43925600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr18:43924000-43929600	Weak transcription	Psoas Muscle	Psoas
42	chr18:43924200-43925800	Enhancers	GM12878-XiMat	blood
43	chr18:43924200-43926000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr18:43924200-43927800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:43924200-43927800	Weak transcription	NHEK	skin
46	chr18:43924200-43937400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:43924200-43938200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr18:43924200-43952800	Weak transcription	Esophagus	oesophagus
49	chr18:43924400-43925400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr18:43924400-43927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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