Variant report

Variant	rs73956266
Chromosome Location	chr18:43803854-43803855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43800168..43802045-chr18:43803617..43805838,2	K562	blood:
2	chr18:43752637..43754966-chr18:43802774..43805667,3	MCF-7	breast:
3	chr18:43795518..43797206-chr18:43801637..43804077,2	K562	blood:
4	chr18:43799735..43802045-chr18:43803265..43805117,3	K562	blood:
5	chr18:43751109..43753936-chr18:43803032..43805358,3	K562	blood:
6	chr18:43753635..43755873-chr18:43803483..43806227,2	MCF-7	breast:
7	chr18:43793217..43797206-chr18:43801637..43804775,4	K562	blood:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56037201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56197126	1.00[AMR][1000 genomes]
rs56404243	1.00[AFR][1000 genomes]
rs56778039	1.00[AMR][1000 genomes]
rs58939953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60643131	1.00[AMR][1000 genomes]
rs61196671	1.00[AMR][1000 genomes]
rs73953967	1.00[AMR][1000 genomes]
rs73953971	1.00[AMR][1000 genomes]
rs73953977	1.00[AMR][1000 genomes]
rs73953979	1.00[AMR][1000 genomes]
rs73956229	1.00[AMR][1000 genomes]
rs73956236	1.00[AMR][1000 genomes]
rs73956253	1.00[AMR][1000 genomes]
rs73956285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43777000-43812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:43777800-43805000	Weak transcription	Fetal Intestine Small	intestine
3	chr18:43791600-43804200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:43792200-43814600	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:43794800-43815000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr18:43796400-43806400	Weak transcription	Small Intestine	intestine
7	chr18:43796600-43804000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:43796600-43804800	Weak transcription	Gastric	stomach
9	chr18:43796600-43804800	Weak transcription	Left Ventricle	heart
10	chr18:43796600-43809600	Weak transcription	Aorta	Aorta
11	chr18:43796600-43809600	Weak transcription	Esophagus	oesophagus
12	chr18:43796600-43809600	Weak transcription	Lung	lung
13	chr18:43796600-43809600	Weak transcription	Spleen	Spleen
14	chr18:43796600-43814200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr18:43796600-43815200	Weak transcription	Pancreas	Pancrea
16	chr18:43796600-43820000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:43796600-43827600	Weak transcription	Fetal Muscle Leg	muscle
18	chr18:43796800-43804800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:43796800-43804800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr18:43796800-43814800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr18:43797000-43804200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:43797000-43804800	Weak transcription	Fetal Intestine Large	intestine
23	chr18:43797000-43804800	Weak transcription	Placenta	Placenta
24	chr18:43797000-43806200	Weak transcription	Liver	Liver
25	chr18:43797000-43814800	Weak transcription	Fetal Brain Female	brain
26	chr18:43797000-43820000	Weak transcription	Ovary	ovary
27	chr18:43797000-43833400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr18:43797400-43829600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr18:43798800-43833800	Weak transcription	HepG2	liver
30	chr18:43799000-43804000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr18:43799000-43804800	Weak transcription	Fetal Thymus	thymus
32	chr18:43799000-43805000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr18:43799000-43814600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr18:43799000-43834000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr18:43799200-43804000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr18:43799200-43804600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr18:43799200-43806200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr18:43800200-43804200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr18:43800200-43806200	Weak transcription	NHLF	lung
40	chr18:43800400-43810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr18:43800400-43814400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr18:43800400-43814600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr18:43800600-43806400	Weak transcription	HSMMtube	muscle
44	chr18:43800800-43804000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr18:43800800-43804000	Weak transcription	NH-A	brain
46	chr18:43800800-43804000	Weak transcription	Osteobl	bone
47	chr18:43800800-43829000	Weak transcription	HSMM	muscle
48	chr18:43801000-43804000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr18:43801000-43804600	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr18:43801000-43805200	Enhancers	Primary T helper cells fromperipheralblood	blood

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