Variant report

Variant	rs73959805
Chromosome Location	chr2:98377034-98377035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs28624680	1.00[AMR][1000 genomes]
rs28688392	1.00[AMR][1000 genomes]
rs55703134	1.00[AMR][1000 genomes]
rs55861914	1.00[AMR][1000 genomes]
rs56056137	1.00[AMR][1000 genomes]
rs56081234	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56210806	1.00[AMR][1000 genomes]
rs56238985	1.00[AMR][1000 genomes]
rs56305927	1.00[AMR][1000 genomes]
rs57004424	1.00[AMR][1000 genomes]
rs57708882	1.00[AMR][1000 genomes]
rs57836517	1.00[AMR][1000 genomes]
rs57970329	1.00[AMR][1000 genomes]
rs58161649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60066040	1.00[AMR][1000 genomes]
rs6720044	1.00[AMR][1000 genomes]
rs73959728	1.00[AMR][1000 genomes]
rs73959737	1.00[AMR][1000 genomes]
rs73960444	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:98359200-98382400	Weak transcription	Psoas Muscle	Psoas
3	chr2:98366200-98400000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr2:98366400-98384600	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr2:98366800-98377600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:98367200-98385000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr2:98367400-98380000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:98368000-98393800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:98368400-98383600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:98368600-98413000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:98369200-98381200	Weak transcription	Fetal Heart	heart
12	chr2:98369600-98398800	Strong transcription	Fetal Muscle Leg	muscle
13	chr2:98369800-98384800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:98370200-98392600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:98370400-98382800	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:98370400-98383600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:98370400-98386400	Strong transcription	Fetal Intestine Small	intestine
18	chr2:98370600-98381800	Strong transcription	Lung	lung
19	chr2:98370600-98384400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr2:98370600-98384400	Strong transcription	Placenta	Placenta
21	chr2:98370600-98392400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:98370600-98393800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:98370600-98407600	Weak transcription	HUVEC	blood vessel
24	chr2:98370800-98384200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:98370800-98384400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr2:98370800-98384400	Strong transcription	Fetal Stomach	stomach
27	chr2:98371000-98377800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:98371000-98379200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:98371000-98379800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:98371000-98379800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:98371000-98383000	Strong transcription	Brain Angular Gyrus	brain
32	chr2:98371000-98383000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:98371000-98383400	Strong transcription	Brain Cingulate Gyrus	brain
34	chr2:98371000-98384800	Strong transcription	Fetal Intestine Large	intestine
35	chr2:98371200-98377400	Strong transcription	Spleen	Spleen
36	chr2:98371200-98383000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:98371200-98383000	Strong transcription	Brain Anterior Caudate	brain
38	chr2:98371200-98383000	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr2:98371200-98383200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:98371200-98383400	Strong transcription	Colonic Mucosa	Colon
41	chr2:98371200-98384400	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:98371200-98384400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr2:98371200-98387400	Strong transcription	Liver	Liver
44	chr2:98371200-98398600	Strong transcription	Primary B cells from cord blood	blood
45	chr2:98371400-98379000	Strong transcription	Brain Substantia Nigra	brain
46	chr2:98371400-98383400	Strong transcription	Brain Hippocampus Middle	brain
47	chr2:98371400-98383400	Strong transcription	Fetal Brain Female	brain
48	chr2:98371400-98383400	Strong transcription	Dnd41	blood
49	chr2:98371800-98377600	Strong transcription	GM12878-XiMat	blood
50	chr2:98371800-98384200	Strong transcription	Thymus	Thymus

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