Variant report

Variant	rs73962072
Chromosome Location	chr2:145452648-145452649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16823942	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16823955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16823979	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58376008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962049	1.00[AMR][1000 genomes]
rs73962058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963933	0.83[AMR][1000 genomes]
rs7566059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7569969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145438800-145452800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:145450400-145469200	Weak transcription	Aorta	Aorta
3	chr2:145451800-145452800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:145452200-145453000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:145452400-145457400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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