Variant report

Variant	rs73962168
Chromosome Location	chr2:144761828-144761829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144760510..144763238-chr2:145137161..145139073,2	K562	blood:
2	chr2:144761315..144764034-chr2:144765585..144767891,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72852929	0.81[AFR][1000 genomes]
rs72852938	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144713600-144780000	Weak transcription	HSMMtube	muscle
2	chr2:144723000-144795600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:144726200-144780800	Weak transcription	Primary B cells from cord blood	blood
4	chr2:144735800-144800400	Weak transcription	Ovary	ovary
5	chr2:144746400-144773000	Weak transcription	Aorta	Aorta
6	chr2:144752200-144768800	Weak transcription	Adipose Nuclei	Adipose
7	chr2:144754000-144768000	Weak transcription	Psoas Muscle	Psoas
8	chr2:144754000-144778200	Weak transcription	Left Ventricle	heart
9	chr2:144754600-144768000	Weak transcription	Fetal Kidney	kidney
10	chr2:144756200-144768000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:144757800-144766600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:144758000-144764000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:144761000-144762400	Enhancers	K562	blood
14	chr2:144761000-144762600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:144761200-144762400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:144761200-144762600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr2:144761200-144762800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr2:144761600-144762400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:144761600-144762600	Weak transcription	Fetal Stomach	stomach
20	chr2:144761600-144767800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:144761800-144764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:144761800-144766200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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