Variant report

Variant	rs73962193
Chromosome Location	chr2:144800570-144800571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12613814	0.81[AFR][1000 genomes]
rs1427310	0.84[AFR][1000 genomes]
rs1861878	0.80[AFR][1000 genomes]
rs1864245	0.80[AFR][1000 genomes]
rs28679451	0.80[AFR][1000 genomes]
rs3820756	0.80[AFR][1000 genomes]
rs55637225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915218	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56001970	1.00[AMR][1000 genomes]
rs56136411	0.80[AFR][1000 genomes]
rs56258437	1.00[AMR][1000 genomes]
rs56395361	0.84[AFR][1000 genomes]
rs56396630	1.00[AMR][1000 genomes]
rs57183340	1.00[AMR][1000 genomes]
rs57398691	1.00[AMR][1000 genomes]
rs57410426	1.00[AMR][1000 genomes]
rs57677579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57783534	1.00[AMR][1000 genomes]
rs58722310	1.00[AMR][1000 genomes]
rs59033824	0.84[AFR][1000 genomes]
rs59290279	1.00[AMR][1000 genomes]
rs59430219	1.00[AMR][1000 genomes]
rs59467006	0.87[AFR][1000 genomes]
rs59505116	1.00[AMR][1000 genomes]
rs60225630	1.00[AMR][1000 genomes]
rs60644335	1.00[AMR][1000 genomes]
rs60696610	1.00[AMR][1000 genomes]
rs61639522	1.00[AMR][1000 genomes]
rs72852969	0.80[AFR][1000 genomes]
rs72852985	0.80[AFR][1000 genomes]
rs72852992	0.80[AFR][1000 genomes]
rs73962140	1.00[AMR][1000 genomes]
rs73962146	1.00[AMR][1000 genomes]
rs73962150	1.00[AMR][1000 genomes]
rs73962196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964930	0.81[AFR][1000 genomes]
rs73964931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964932	1.00[AMR][1000 genomes]
rs73964942	1.00[AMR][1000 genomes]
rs73964945	1.00[AMR][1000 genomes]
rs73964947	1.00[AMR][1000 genomes]
rs73964949	1.00[AMR][1000 genomes]
rs73964951	1.00[AMR][1000 genomes]
rs73964952	1.00[AMR][1000 genomes]
rs73964953	1.00[AMR][1000 genomes]
rs73964955	1.00[AMR][1000 genomes]
rs73964957	1.00[AMR][1000 genomes]
rs73964962	1.00[AMR][1000 genomes]
rs73964964	1.00[AMR][1000 genomes]
rs73964965	1.00[AMR][1000 genomes]
rs73964969	1.00[AMR][1000 genomes]
rs73964970	1.00[AMR][1000 genomes]
rs73964972	1.00[AMR][1000 genomes]
rs73964973	1.00[AMR][1000 genomes]
rs73964974	1.00[AMR][1000 genomes]
rs73964975	1.00[AMR][1000 genomes]
rs73964977	1.00[AMR][1000 genomes]
rs73964979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144773800-144800600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:144783600-144817000	Weak transcription	Aorta	Aorta
3	chr2:144797000-144804400	Weak transcription	Primary T cells from cord blood	blood
4	chr2:144797400-144800800	Weak transcription	Psoas Muscle	Psoas
5	chr2:144798000-144808000	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links