Variant report

Variant	rs73963542
Chromosome Location	chr2:142472315-142472316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73963544	0.84[AFR][1000 genomes]
rs73963553	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv433206	chr2:142469781-142486875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142469800-142472400	Weak transcription	Fetal Lung	lung
2	chr2:142471400-142472400	Enhancers	Rectal Smooth Muscle	rectum
3	chr2:142471400-142472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:142471400-142472600	Enhancers	Dnd41	blood
5	chr2:142471400-142472800	Enhancers	Fetal Brain Male	brain
6	chr2:142471600-142473000	Enhancers	Adipose Nuclei	Adipose
7	chr2:142472000-142472800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:142472000-142472800	Enhancers	Liver	Liver
9	chr2:142472000-142473600	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:142472200-142472600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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