Variant report

Variant	rs73965120
Chromosome Location	chr2:145764891-145764892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55836609	1.00[AMR][1000 genomes]
rs56412031	1.00[AMR][1000 genomes]
rs56769655	1.00[AMR][1000 genomes]
rs56790676	1.00[AMR][1000 genomes]
rs59039216	1.00[AMR][1000 genomes]
rs73963955	1.00[AMR][1000 genomes]
rs73963956	1.00[AMR][1000 genomes]
rs73963957	1.00[AMR][1000 genomes]
rs73963960	1.00[AMR][1000 genomes]
rs73965119	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145758400-145765000	Weak transcription	Adipose Nuclei	Adipose
2	chr2:145764000-145765200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:145764200-145765000	Enhancers	Osteobl	bone
4	chr2:145764200-145765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:145764200-145765200	Enhancers	HSMM	muscle
6	chr2:145764200-145765800	Flanking Active TSS	HUVEC	blood vessel
7	chr2:145764400-145765800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr2:145764600-145765000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:145764600-145765000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:145764600-145765000	Active TSS	HSMMtube	muscle
11	chr2:145764600-145765000	Active TSS	NH-A	brain
12	chr2:145764600-145765200	Active TSS	Aorta	Aorta
13	chr2:145764600-145765200	Active TSS	HMEC	breast
14	chr2:145764600-145765200	Active TSS	NHDF-Ad	bronchial
15	chr2:145764600-145765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:145764600-145765600	Flanking Active TSS	NHLF	lung
17	chr2:145764800-145765000	Active TSS	Brain Angular Gyrus	brain
18	chr2:145764800-145765000	Enhancers	Small Intestine	intestine
19	chr2:145764800-145765200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:145764800-145765200	Active TSS	A549	lung
21	chr2:145764800-145765200	Flanking Active TSS	Hela-S3	cervix
22	chr2:145764800-145765400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:145764800-145765400	Active TSS	Right Atrium	heart
24	chr2:145764800-145765600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:145764800-145765600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:145764800-145765800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:145764800-145765800	Enhancers	Fetal Lung	lung
28	chr2:145764800-145766000	Enhancers	Fetal Heart	heart

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