Variant report

Variant	rs73965705
Chromosome Location	chr2:142310307-142310308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10169343	1.00[AMR][1000 genomes]
rs56105167	0.80[AFR][1000 genomes]
rs57694809	1.00[AMR][1000 genomes]
rs59843588	1.00[AMR][1000 genomes]
rs60909126	1.00[AMR][1000 genomes]
rs6714661	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6715233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6729105	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6732315	1.00[AMR][1000 genomes]
rs6732675	1.00[AMR][1000 genomes]
rs73963380	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963381	1.00[AMR][1000 genomes]
rs73963402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73965724	1.00[AMR][1000 genomes]
rs73965725	1.00[AMR][1000 genomes]
rs73965727	1.00[AMR][1000 genomes]
rs73965728	1.00[AMR][1000 genomes]
rs73965729	1.00[AMR][1000 genomes]
rs7571949	1.00[AMR][1000 genomes]
rs7579724	1.00[AMR][1000 genomes]
rs7592197	1.00[AMR][1000 genomes]
rs7593653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3422340	chr2:142310307-142312855	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142306200-142312200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:142306400-142312200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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